Regulog HspR - Mycobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By TF family - MerR
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium avium 104 | 6 | 3 |
| Mycobacterium abscessus ATCC 19977 | 6 | 3 |
| Mycobacterium leprae TN | 5 | 2 |
| Mycobacterium flavescens PYR-GCK | 7 | 4 |
| Mycobacterium marinum M | 6 | 3 |
| Mycobacterium smegmatis str. MC2 155 | 7 | 4 |
| Mycobacterium sp. JLS | 7 | 4 |
| Mycobacterium tuberculosis H37Rv | 6 | 3 |
| Mycobacterium vanbaalenii PYR-1 | 7 | 4 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| lon |
|
|
|
*
Mycobacterium flavescens PYR-GCK Site: position = -49 score = 5.0393 sequence = TTGAGCGCATCAGGTTCAA Gene: Mflv_3336: ATP-dependent Lon protease |
Gene: MMAR_2751: ATP-dependent Lon protease |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -32 score = 5.20676 sequence = TTGAGTGCATCAGACTGAA Gene: MSMEG_3582: ATP-dependent Lon protease |
*
Mycobacterium sp. JLS Site: position = -33 score = 5.12765 sequence = TTGAGTCGATCTGACTGAA Gene: Mjls_2802: ATP-dependent Lon protease |
|
*
Mycobacterium vanbaalenii PYR-1 Site: position = -32 score = 5.0393 sequence = TTGAGCGCATCAGGTTCAA Gene: Mvan_3064: ATP-dependent Lon protease |
ATP-dependent Lon protease |
| CRON 2. | ||||||||||
| hsp |
*
Mycobacterium avium 104 Site: position = -99 score = 4.941 sequence = TTAAGCGTGGTCGACTCAT Gene: MAV_4906: Heat shock protein Hsp20 |
*
Mycobacterium abscessus ATCC 19977 Site: position = -74 score = 4.93929 sequence = TTAAGCGCACGGCACTCAA Gene: MAB_4402: Heat shock protein Hsp20 |
|
*
Mycobacterium flavescens PYR-GCK Site: position = -72 score = 5.34345 sequence = ATGAGCGTACCCGACTCAA Gene: Mflv_0388: Heat shock protein Hsp20 |
*
Mycobacterium marinum M Site: position = -89 score = 4.80327 sequence = TTTAGCGTGGTCGACTCAT Gene: MMAR_0515: Heat shock protein Hsp20 |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -81 score = 5.34345 sequence = ATGAGCGTGGTCGACTCAA Gene: MSMEG_0424: Heat shock protein Hsp20 |
*
Mycobacterium sp. JLS Site: position = -78 score = 5.31736 sequence = ATGAGCGCGGTCGACTCAA Gene: Mjls_0247: Heat shock protein Hsp20 |
*
Mycobacterium tuberculosis H37Rv Site: position = -88 score = 4.92239 sequence = TTAAGCGTGGTCGACTCAG Gene: Rv0251c: Heat shock protein Hsp20 |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -72 score = 5.03785 sequence = ATGAGCGCCGTCGACTCAA Gene: Mvan_0296: Heat shock protein Hsp20 |
Heat shock protein Hsp20 |
| CRON 3. | ||||||||||
| dnaK |
*
Mycobacterium avium 104 Site: position = -64 score = 5.32133 sequence = TTGAGCGGGGTTCACTCAG Site: position = -119 score = 5.11034 sequence = TTGAGCGAACCGGACTGAA Gene: MAV_4808: Chaperone protein DnaK |
*
Mycobacterium abscessus ATCC 19977 Site: position = -105 score = 5.15222 sequence = TTGAGTCACATTGACTCAA Site: position = -51 score = 5.22262 sequence = TTGAGCGGATCTCACTGAA Gene: MAB_4273c: Chaperone protein DnaK |
*
Mycobacterium leprae TN Site: position = -70 score = 4.82979 sequence = TTGAGTTAAGTTCACTCAG Gene: ML2496: Chaperone protein DnaK |
*
Mycobacterium flavescens PYR-GCK Site: position = -61 score = 5.26192 sequence = TTGAGCCCGGTGCACTCAT Site: position = -116 score = 5.22125 sequence = TTGAGTCACATAGACTCAA Gene: Mflv_0260: Chaperone protein DnaK |
*
Mycobacterium marinum M Site: position = -117 score = 5.12731 sequence = TTGAGCGAACCATACTCAA Site: position = -61 score = 5.32133 sequence = TTGAGCGGGGTTCACTCAG Gene: MMAR_0637: Chaperone protein DnaK |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -47 score = 5.37606 sequence = TTGAGCGCAGTCCGCTCAG Site: position = -102 score = 5.31611 sequence = TTGAGTGACATCGACTCAA Gene: MSMEG_0709: Chaperone protein DnaK |
*
Mycobacterium sp. JLS Site: position = -114 score = 5.58325 sequence = TTGAGTGAACTTCGCTCAA Site: position = -59 score = 5.36426 sequence = TTGAGTGCGGTCCGCTCAG Gene: Mjls_0449: Chaperone protein DnaK |
*
Mycobacterium tuberculosis H37Rv Site: position = -116 score = 5.26072 sequence = TTGAGTGCATCAGGCTCAG Site: position = -62 score = 5.38288 sequence = TTGAGCGGGGTGCACTCAT Gene: Rv0350: Chaperone protein DnaK |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -108 score = 5.00577 sequence = TTGAGTGATACAGACTCAA Site: position = -53 score = 5.27937 sequence = TTGAGTCCGGTGCACTCAG Gene: Mvan_0634: Chaperone protein DnaK |
Chaperone protein DnaK |
| grpE |
Gene: MAV_4807: Heat shock protein GrpE |
Gene: MAB_4272c: Heat shock protein GrpE |
Gene: ML2495: Heat shock protein GrpE |
Gene: Mflv_0259: Heat shock protein GrpE |
Gene: MMAR_0638: Heat shock protein GrpE |
Gene: MSMEG_0710: Heat shock protein GrpE |
Gene: Mjls_0450: Heat shock protein GrpE |
Gene: Rv0351: Heat shock protein GrpE |
Gene: Mvan_0635: Heat shock protein GrpE |
Heat shock protein GrpE |
| dnaJ |
Gene: MAV_4806: Chaperone protein DnaJ |
Gene: MAB_4271c: Chaperone protein DnaJ |
Gene: ML2494: Chaperone protein DnaJ |
Gene: Mflv_0258: Chaperone protein DnaJ |
Gene: MMAR_0639: Chaperone protein DnaJ |
Gene: MSMEG_0711: Chaperone protein DnaJ |
Gene: Mjls_0451: Chaperone protein DnaJ |
Gene: Rv0352: Chaperone protein DnaJ |
Gene: Mvan_0636: Chaperone protein DnaJ |
Chaperone protein DnaJ |
| hspR |
Gene: MAV_4805: Heat shock response transcriptional regulator HspR, MerR family |
Gene: MAB_4270c: Heat shock response transcriptional regulator HspR, MerR family |
Gene: ML2493: Heat shock response transcriptional regulator HspR, MerR family |
Gene: Mflv_0257: Heat shock response transcriptional regulator HspR, MerR family |
Gene: MMAR_0640: Heat shock response transcriptional regulator HspR, MerR family |
Gene: MSMEG_0713: Heat shock response transcriptional regulator HspR, MerR family |
Gene: Mjls_0452: Heat shock response transcriptional regulator HspR, MerR family |
Gene: Rv0353: Heat shock response transcriptional regulator HspR, MerR family |
Gene: Mvan_0637: Heat shock response transcriptional regulator HspR, MerR family |
Heat shock response transcriptional regulator HspR, MerR family |
| CRON 4. | ||||||||||
| clpB |
*
Mycobacterium avium 104 Site: position = -78 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: MAV_4793: ATP-dependent chaperone ClpB |
*
Mycobacterium abscessus ATCC 19977 Site: position = -73 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: MAB_4265c: ATP-dependent chaperone ClpB |
*
Mycobacterium leprae TN Site: position = -80 score = 5.2622 sequence = TTGAGTGGAACAGACTTAA Gene: ML2490: ATP-dependent chaperone ClpB |
*
Mycobacterium flavescens PYR-GCK Site: position = -96 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: Mflv_0246: ATP-dependent chaperone ClpB |
*
Mycobacterium marinum M Site: position = -82 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: MMAR_0645: ATP-dependent chaperone ClpB |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -76 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: MSMEG_0732: ATP-dependent chaperone ClpB |
*
Mycobacterium sp. JLS Site: position = -74 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: Mjls_0467: ATP-dependent chaperone ClpB |
*
Mycobacterium tuberculosis H37Rv Site: position = -77 score = 5.62858 sequence = TTGAGCGGAACAGACTCAA Gene: Rv0384c: ATP-dependent chaperone ClpB |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -96 score = 5.6941 sequence = TTGAGCGGAACACACTCAA Gene: Mvan_0659: ATP-dependent chaperone ClpB |
ATP-dependent chaperone ClpB |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |