Regulog YrdX3 - Sphingomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Zymomonas mobilis subsp. mobilis ZM4
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1	2	2
Sphingopyxis alaskensis RB2256

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
COG5349	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Zymomonas mobilis subsp. mobilis ZM4	Sphingobium japonicum UT26S Gene: SJA_C1-16560: conserved hypothetical protein in cyt c oxidase gene clusters	* Sphingomonas wittichii RW1 Site: position = -65 score = 7.84727 sequence = TATGTATGGTT-(5)-AGCCATACAAA Gene: Swit_2765: conserved hypothetical protein in cyt c oxidase gene clusters	Sphingopyxis alaskensis RB2256	conserved hypothetical protein in cyt c oxidase gene clusters

CRON 2.
yrdX3	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Zymomonas mobilis subsp. mobilis ZM4	Sphingobium japonicum UT26S	* Sphingomonas wittichii RW1 Site: position = -43 score = 7.84727 sequence = TTTGTATGGCT-(5)-AACCATACATA Gene: Swit_2764: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Sphingopyxis alaskensis RB2256	Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --