Regulog YrdX3 - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | ||
| Erythrobacter sp. NAP1 | ||
| Novosphingobium aromaticivorans DSM 12444 | ||
| Zymomonas mobilis subsp. mobilis ZM4 | ||
| Sphingobium japonicum UT26S | ||
| Sphingomonas wittichii RW1 | 2 | 2 |
| Sphingopyxis alaskensis RB2256 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| COG5349 |
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Gene: SJA_C1-16560: conserved hypothetical protein in cyt c oxidase gene clusters |
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Sphingomonas wittichii RW1 Site: position = -65 score = 7.84727 sequence = TATGTATGGTT-(5)-AGCCATACAAA Gene: Swit_2765: conserved hypothetical protein in cyt c oxidase gene clusters |
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conserved hypothetical protein in cyt c oxidase gene clusters |
| CRON 2. | ||||||||
| yrdX3 |
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Sphingomonas wittichii RW1 Site: position = -43 score = 7.84727 sequence = TTTGTATGGCT-(5)-AACCATACATA Gene: Swit_2764: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |