Regulog YrdX2 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234	1	1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	1	1
Xanthobacter autotrophicus Py2	5	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
COG1171 (IlvA)	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19680: Threonine dehydratase, Pyridoxal-5'-phosphate-dependent enzyme	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	* Xanthobacter autotrophicus Py2 Site: position = -75 score = 7.8994 sequence = GTTCATACAGG-(7)-TTTGTATGCAT Gene: Xaut_1506: Threonine dehydratase, Pyridoxal-5'-phosphate-dependent enzyme	Threonine dehydratase, Pyridoxal-5'-phosphate-dependent enzyme
NGR_b19690	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19690: hypothetical protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1505: hypothetical protein	hypothetical protein
COG251 (TdcF)	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19700: Endoribonuclease L-PSP	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1504: Endoribonuclease L-PSP	Endoribonuclease L-PSP

CRON 2.
Xaut_0414	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	* Xanthobacter autotrophicus Py2 Site: position = -41 score = 8.32739 sequence = TTGCGTACAAT-(7)-ATTGTATGGCT Gene: Xaut_0414: putative transcriptional regulator, GntR family	putative transcriptional regulator, GntR family

CRON 3.
COG5349	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01276: conserved hypothetical protein in cyt c oxidase gene clusters	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1423: conserved hypothetical protein in cyt c oxidase gene clusters	* Rhizobium sp. NGR234 Site: position = -132 score = 9.22943 sequence = ATGCATACAAT-(6)-AGTGTATGTTA Gene: NGR_c19900: conserved hypothetical protein in cyt c oxidase gene clusters	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -62 score = 9.74424 sequence = ATGCATACAAT-(8)-CTTGTATGGTT Gene: SMc01488: conserved hypothetical protein in cyt c oxidase gene clusters	* Xanthobacter autotrophicus Py2 Site: position = 4 score = 8.96054 sequence = ACGCATACAAT-(6)-ATTGTATGCGT Gene: Xaut_0415: conserved hypothetical protein in cyt c oxidase gene clusters	conserved hypothetical protein in cyt c oxidase gene clusters

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX2 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --