Regulog BPSL1086 - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia mallei ATCC 23344	4	2
Burkholderia phymatum STM815	1	1
Burkholderia glumae BGR1	5	2
Burkholderia cepacia AMMD	6	2
Burkholderia pseudomallei K96243	6	2
Burkholderia sp. 383	6	2
Burkholderia vietnamiensis G4	6	2
Burkholderia xenovorans LB400	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF01810	* Burkholderia mallei ATCC 23344 Site: position = -110 score = 18.7969 sequence = ATCCCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTACAG-(8)-CACTACACTCA Gene: BMAA0052: Transporter, LysE family	* Burkholderia phymatum STM815 Site: position = -96 score = 17.6655 sequence = GCTCCGTACCG-(13)-AATCTGTATAG-(0)-GTACTGTACCG-(8)-CGCTACACTGT Gene: Bphy_4474: Transporter, LysE family	* Burkholderia glumae BGR1 Site: position = -112 score = 17.1449 sequence = AACTCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTATCG-(8)-CGCTACACTGG Gene: bglu_2g00680: Transporter, LysE family	* Burkholderia cepacia AMMD Site: position = -102 score = 17.6913 sequence = TCCCCGTACCG-(13)-TAACTGTACCG-(0)-GTACTGTACAT-(8)-CGCTAAACTGA Gene: Bamb_5024: Transporter, LysE family	* Burkholderia pseudomallei K96243 Site: position = -110 score = 18.7969 sequence = ATCCCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTACAG-(8)-CACTACACTCA Gene: BPSS0050: Transporter, LysE family	* Burkholderia sp. 383 Site: position = -102 score = 18.4015 sequence = TCCCCGTACCG-(13)-CAACTGTACCG-(0)-GTACTGTACAG-(8)-CGCTAAACTGA Gene: Bcep18194_B3122: Transporter, LysE family	* Burkholderia vietnamiensis G4 Site: position = -103 score = 18.7632 sequence = CCTCCGTACCG-(13)-CAACTGTACCG-(0)-GTACTGTACAT-(8)-CGCTACACTGA Gene: Bcep1808_3736: Transporter, LysE family	* Burkholderia xenovorans LB400 Site: position = -99 score = 17.264 sequence = CCCCCGTACCG-(13)-AAACCGTACAG-(0)-GTACTGTACCG-(8)-CGCTAGAATGC Gene: Bxe_B0672: Transporter, LysE family	Transporter, LysE family

CRON 2.
BMA1950	* Burkholderia mallei ATCC 23344 Site: position = -27 score = 19.1386 sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTT Gene: BMA1950: Riboflavin-specific deaminase	Burkholderia phymatum STM815	* Burkholderia glumae BGR1 Site: position = -323 score = 17.4069 sequence = GAACTGTACAG-(13)-CGATTGTACCG-(0)-TTACTGTTCCG-(8)-GATTACAGTTT Gene: bglu_1g26840: Riboflavin-specific deaminase	* Burkholderia cepacia AMMD Site: position = -206 score = 18.7895 sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG Gene: Bamb_2385: Riboflavin-specific deaminase	* Burkholderia pseudomallei K96243 Site: position = -138 score = 19.1386 sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTT Gene: BPSL1085: Riboflavin-specific deaminase	* Burkholderia sp. 383 Site: position = -218 score = 18.7895 sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG Gene: Bcep18194_A5688: Riboflavin-specific deaminase	* Burkholderia vietnamiensis G4 Site: position = -181 score = 18.7895 sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG Gene: Bcep1808_2436: Riboflavin-specific deaminase	* Burkholderia xenovorans LB400 Site: position = -267 score = 17.9389 sequence = CAACTGTACCG-(13)-CGATTGTATCG-(0)-TTACTGTGCAG-(8)-CGCTACATTTG Gene: Bxe_A3331: Riboflavin-specific deaminase	Riboflavin-specific deaminase
PF00892	Burkholderia mallei ATCC 23344 Gene: BMA1951: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia phymatum STM815 Gene: Bphy_2116: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia glumae BGR1 Gene: bglu_1g26850: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia cepacia AMMD Gene: Bamb_2386: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia pseudomallei K96243 Gene: BPSL1084: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia sp. 383 Gene: Bcep18194_A5689: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia vietnamiensis G4 Gene: Bcep1808_2437: Permease of the drug/metabolite transporter (DMT) superfamily	Burkholderia xenovorans LB400	Permease of the drug/metabolite transporter (DMT) superfamily
aspB	Burkholderia mallei ATCC 23344 Gene: BMA1952: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia phymatum STM815 Gene: Bphy_2117: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia glumae BGR1 Gene: bglu_1g26860: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia cepacia AMMD Gene: Bamb_2387: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia pseudomallei K96243 Gene: BPSL1083: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia sp. 383 Gene: Bcep18194_A5690: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_2438: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Burkholderia xenovorans LB400 Gene: Bxe_A3332: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
COG251 (TdcF)	Burkholderia mallei ATCC 23344 Gene: BMA2223: Endoribonuclease, L-PSP family	Burkholderia phymatum STM815 Gene: Bphy_2118: Endoribonuclease, L-PSP family	Burkholderia glumae BGR1 Gene: bglu_1g26870: Endoribonuclease, L-PSP family	Burkholderia cepacia AMMD Gene: Bamb_2388: Endoribonuclease, L-PSP family	Burkholderia pseudomallei K96243 Gene: BPSL1082: Endoribonuclease, L-PSP family	Burkholderia sp. 383 Gene: Bcep18194_A5691: Endoribonuclease, L-PSP family	Burkholderia vietnamiensis G4 Gene: Bcep1808_2439: Endoribonuclease, L-PSP family	Burkholderia xenovorans LB400 Gene: Bxe_A3333: Endoribonuclease, L-PSP family	Endoribonuclease, L-PSP family
COG384 (PhzF)	Burkholderia mallei ATCC 23344 Gene: BMA2222: Phenazine biosynthesis protein PhzF like	Burkholderia phymatum STM815 Gene: Bphy_2119: Phenazine biosynthesis protein PhzF like	Burkholderia glumae BGR1	Burkholderia cepacia AMMD Gene: Bamb_2389: Phenazine biosynthesis protein PhzF like	Burkholderia pseudomallei K96243 Gene: BPSL1081: Phenazine biosynthesis protein PhzF like	Burkholderia sp. 383 Gene: Bcep18194_A5692: Phenazine biosynthesis protein PhzF like	Burkholderia vietnamiensis G4 Gene: Bcep1808_2440: Phenazine biosynthesis protein PhzF like	Burkholderia xenovorans LB400 Gene: Bxe_A3334: Phenazine biosynthesis protein PhzF like	Phenazine biosynthesis protein PhzF like

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BPSL1086 - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --