Regulog YcxD - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Multidrug efflux
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052	1	1
Clostridium butyricum 5521
Clostridium botulinum A str. ATCC 3502	1	1
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
celF	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -273 score = 10.4823 sequence = AACTGTACT-(0)-AGTACAGTT-(12)-TATTGAATA Gene: Cbei_4036: 6-phospho-beta-glucosidase (EC 3.2.1.86)	Clostridium butyricum 5521	Clostridium botulinum A str. ATCC 3502 Gene: CBO3360: 6-phospho-beta-glucosidase (EC 3.2.1.86)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	6-phospho-beta-glucosidase (EC 3.2.1.86)

CRON 2.
ycxC	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium butyricum 5521	* Clostridium botulinum A str. ATCC 3502 Site: position = -127 score = 13.6312 sequence = ACCTGTACC-(0)-GGTATAGAT-(12)-TATTGTACC Gene: CBO2013: DMT superfamily drug/metabolite transporter	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	DMT superfamily drug/metabolite transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --