Regulog TauR2 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Oceanicola batsensis HTCC2597
Loktanella vestfoldensis SKA53
Roseovarius sp. 217	5	2
Roseovarius nubinhibens ISM
Sulfitobacter sp. EE-36
Silicibacter pomeroyi DSS-3	5	2
Silicibacter TM1040
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
ROS217_02040	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53	* Roseovarius sp. 217 Site: position = -139 score = 9.19225 sequence = CTGTCCCCTT-(12)-CTGTCCCTTC Gene: ROS217_02040: TRAP-type C4-dicarboxylate transport system, periplasmic component	Roseovarius nubinhibens ISM	Sulfitobacter sp. EE-36	* Silicibacter pomeroyi DSS-3 Site: position = -96 score = 8.79108 sequence = CTGTCACCCG-(12)-CTGTCACTTT Gene: SPOA0374: TRAP-type C4-dicarboxylate transport system, periplasmic component	Silicibacter TM1040	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	TRAP-type C4-dicarboxylate transport system, periplasmic component
ROS217_02045	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53	Roseovarius sp. 217 Gene: ROS217_02045: TRAP-type C4-dicarboxylate transport system, large permease component	Roseovarius nubinhibens ISM	Sulfitobacter sp. EE-36	Silicibacter pomeroyi DSS-3 Gene: SPOA0373: TRAP-type C4-dicarboxylate transport system, large permease component	Silicibacter TM1040	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	TRAP-type C4-dicarboxylate transport system, large permease component
ROS217_02050	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53	Roseovarius sp. 217 Gene: ROS217_02050: TRAP-type C4-dicarboxylate transport system, small permease component	Roseovarius nubinhibens ISM	Sulfitobacter sp. EE-36	Silicibacter pomeroyi DSS-3 Gene: SPOA0372: TRAP-type C4-dicarboxylate transport system, small permease component	Silicibacter TM1040	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	TRAP-type C4-dicarboxylate transport system, small permease component

CRON 2.
COG-MhpC	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53	* Roseovarius sp. 217 Site: position = -233 score = 8.4344 sequence = CTGTCCCTTC-(12)-CTGTCTCTCG Gene: ROS217_02030: Epoxide hydrolase domain protein	Roseovarius nubinhibens ISM	Sulfitobacter sp. EE-36	* Silicibacter pomeroyi DSS-3 Site: position = 16 score = 8.4344 sequence = CTGTCCCTTC-(12)-CTGTCTCTCG Gene: SPOA0376: Epoxide hydrolase domain protein	Silicibacter TM1040	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Epoxide hydrolase domain protein
COG1012 (PutA)	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53	Roseovarius sp. 217 Gene: ROS217_02025: NAD-dependent aldehyde dehydrogenase (EC 1.2.1.3)	Roseovarius nubinhibens ISM	Sulfitobacter sp. EE-36	Silicibacter pomeroyi DSS-3 Gene: SPOA0377: NAD-dependent aldehyde dehydrogenase (EC 1.2.1.3)	Silicibacter TM1040	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	NAD-dependent aldehyde dehydrogenase (EC 1.2.1.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TauR2 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --