Regulog NifA - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen fixation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NifA
- By TF family - Fis
- By pathway - Nitrogen fixation
| Genome | Genes | Operons |
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| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | 26 | 7 |
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| nifB |
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Rhodobacter sphaeroides 2.4.1 Site: position = -122 score = 5.22578 sequence = TGTCGCATTTGCGACC Site: position = -38 score = 4.56391 sequence = TCTCCGAAATCCGACA Gene: RSP_0546: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
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Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
| CRON 2. | ||||||||||||||||
| modD |
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Rhodobacter sphaeroides 2.4.1 Site: position = -227 score = 5.00756 sequence = GGTCGCAAGTCCGACA Site: position = -206 score = 4.70689 sequence = GGTCGGGATTGCGACG Gene: RSP_2501: Molybdenum transport system protein ModD |
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Molybdenum transport system protein ModD |
| CRON 3. | ||||||||||||||||
| iscN |
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Rhodobacter sphaeroides 2.4.1 Site: position = -128 score = 3.74489 sequence = TGTCGGATTCCCTCCG Site: position = -145 score = 4.78069 sequence = TGTCGCGAACCCGTCA Gene: RSP_0532: Fe-S cofactor nitrogenase synthesis protein IscN |
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Fe-S cofactor nitrogenase synthesis protein IscN |
| nifU |
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Gene: RSP_0531: Iron-sulfur cluster assembly scaffold protein NifU |
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Iron-sulfur cluster assembly scaffold protein NifU |
| nifS |
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Gene: RSP_0530: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
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Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
| nifV |
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Gene: RSP_0529: Homocitrate synthase (EC 2.3.3.14) |
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Homocitrate synthase (EC 2.3.3.14) |
| nifW |
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Gene: RSP_0528: Nitrogenase stabilizing/protective protein NifW |
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Nitrogenase stabilizing/protective protein NifW |
| rpoN |
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Gene: RSP_0527: RNA polymerase sigma-54 factor RpoN |
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RNA polymerase sigma-54 factor RpoN |
| CRON 4. | ||||||||||||||||
| nifE |
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Rhodobacter sphaeroides 2.4.1 Site: position = -142 score = 5.21001 sequence = TGTCGCAGATGCGACA Gene: RSP_0538: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
| nifN |
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Gene: RSP_0537: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
| nifX |
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Gene: RSP_0536: Nitrogenase FeMo-cofactor carrier protein NifX |
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Nitrogenase FeMo-cofactor carrier protein NifX |
| PF03270 |
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Gene: RSP_0535: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Conserved hypothetical protein, probably related to nitrogen fixation protein |
| fdxB |
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Gene: RSP_0534: Nitrogenase specific ferredoxin III protein FdxB |
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Nitrogenase specific ferredoxin III protein FdxB |
| nifQ |
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Gene: RSP_0533: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
| CRON 5. | ||||||||||||||||
| nifH |
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Rhodobacter sphaeroides 2.4.1 Site: position = -178 score = 4.32984 sequence = TGTCGGTTTTCGCACA Gene: RSP_0541: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
| nifD |
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Gene: RSP_0540: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
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Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
| nifK |
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Gene: RSP_0539: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
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Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
| CRON 6. | ||||||||||||||||
| rnfA |
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Rhodobacter sphaeroides 2.4.1 Site: position = -237 score = 4.4159 sequence = GGGCGGAACCCCGACA Site: position = -217 score = 5.26854 sequence = TGTCGGGAACGCGACA Site: position = -70 score = 4.03417 sequence = TGACAGATGTGCGACA Gene: RSP_3192: Electron transport complex protein RnfA |
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Electron transport complex protein RnfA |
| rnfB |
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Gene: RSP_3193: Electron transport complex protein RnfB |
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Electron transport complex protein RnfB |
| rnfC |
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Gene: RSP_3194: Electron transport complex protein RnfC |
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Electron transport complex protein RnfC |
| rnfD |
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Gene: RSP_3195: Electron transport complex protein RnfD |
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Electron transport complex protein RnfD |
| rnfG |
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Gene: RSP_3196: Electron transport complex protein RnfG |
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Electron transport complex protein RnfG |
| rnfE |
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Gene: RSP_3197: Electron transport complex protein RnfE |
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Electron transport complex protein RnfE |
| rnfH |
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Gene: RSP_3198: Electron transport complex protein RnfH |
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Electron transport complex protein RnfH |
| CRON 7. | ||||||||||||||||
| RSP_2791 |
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Rhodobacter sphaeroides 2.4.1 Site: position = -343 score = 3.96826 sequence = TGCGGCATGCGCCACA Gene: RSP_2791: Predicted GTP cyclohydrolase I |
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Predicted GTP cyclohydrolase I |
| RSP_2790 |
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Gene: RSP_2790: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |