Regulog DasR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | Glucosamine-6-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By trascription factor - DasR
- By TF family - GntR/Others
- By effector - Glucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 8 | 5 |
| Arthrobacter chlorophenolicus A6 | 2 | 2 |
| Arthrobacter sp. FB24 | 8 | 5 |
| Beutenbergia cavernae DSM 12333 | 6 | 2 |
| Brachybacterium faecium DSM 4810 | ||
| Brevibacterium linens BL2 | ||
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | ||
| Janibacter sp. HTCC2649 | ||
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | ||
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | ||
| Renibacterium salmoninarum ATCC 33209 | ||
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| nagT |
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Arthrobacter aurescens TC1 Site: position = -160 score = 4.00287 sequence = CTAGGTATAGACCAAA Site: position = -183 score = 4.14498 sequence = AAAGGACTAGACCAAA Gene: AAur_4092: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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Gene: Bfae_25450: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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2
Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx02590: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein Gene: Lxx17410: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
| nagU |
Gene: AAur_4091: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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Gene: Bfae_25440: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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Gene: Lxx02600: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
| nagV |
Gene: AAur_4090: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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Gene: Bfae_25430: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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Gene: Lxx02610: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
| hex |
Gene: AAur_4089: Beta-hexosaminidase (EC 3.2.1.52) |
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Beta-hexosaminidase (EC 3.2.1.52) |
| CRON 2. | |||||||||||||||
| nagE |
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Arthrobacter sp. FB24 Site: position = -80 score = 4.68263 sequence = ACTGGTTATAACCAGT Site: position = -195 score = 4.15933 sequence = TTTGGACATGTCCACT Gene: Arth_3514: N-acetylglucosamine-specific phosphotransferase system IIC component |
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Gene: Ksed_16900: N-acetylglucosamine-specific phosphotransferase system IIC component |
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N-acetylglucosamine-specific phosphotransferase system IIC component |
| nagA |
Gene: AAur_2589: N-acetylglucosamine-6-phosphate deacetylase |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_3426: N-acetylglucosamine-6-phosphate deacetylase Gene: Achl_3394: N-acetylglucosamine-6-phosphate deacetylase |
3
Arthrobacter sp. FB24 Gene: Arth_3513: N-acetylglucosamine-6-phosphate deacetylase Gene: Arth_0181: N-acetylglucosamine-6-phosphate deacetylase Gene: Arth_1713: N-acetylglucosamine-6-phosphate deacetylase |
Gene: Bcav_1314: N-acetylglucosamine-6-phosphate deacetylase |
Gene: Bfae_19100: N-acetylglucosamine-6-phosphate deacetylase |
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Gene: JNB_12364: N-acetylglucosamine-6-phosphate deacetylase |
Gene: Jden_0226: N-acetylglucosamine-6-phosphate deacetylase |
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Gene: Ksed_16890: N-acetylglucosamine-6-phosphate deacetylase |
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Gene: RSal33209_1452: N-acetylglucosamine-6-phosphate deacetylase |
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N-acetylglucosamine-6-phosphate deacetylase |
| nagB |
Gene: AAur_2579: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: Achl_2322: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
2
Arthrobacter sp. FB24 Gene: Arth_3512: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Gene: Arth_2590: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: Bcav_2749: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: Bfae_13500: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: BlinB01003539: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: Jden_0237: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: RSal33209_1463: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| CRON 3. | |||||||||||||||
| nagE_A |
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Arthrobacter sp. FB24 Site: position = -187 score = 4.68263 sequence = ACTGGTTATAACCAGT Site: position = -72 score = 4.15933 sequence = AGTGGACATGTCCAAA Gene: Arth_3516: PTS system N-acetylglucosamine-specific EIIA component |
Gene: Bcav_2632: PTS system N-acetylglucosamine-specific EIIA component |
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Gene: Jden_0939: PTS system N-acetylglucosamine-specific EIIA component |
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Gene: Ksed_16940: PTS system N-acetylglucosamine-specific EIIA component |
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PTS system N-acetylglucosamine-specific EIIA component |
| dasR |
*2
Arthrobacter aurescens TC1 Site: position = -65 score = 5.01771 sequence = ACTGGTCTAGACCTCC Gene: AAur_2211: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family Site: position = -38 score = 5.08935 sequence = ATTGGTTTAGACCAAC Site: position = -14 score = 4.59181 sequence = ATTGGCATAGACCAAT Gene: AAur_2055: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Arthrobacter chlorophenolicus A6 Site: position = -56 score = 4.92576 sequence = GCTGGTCTAGACCTGA Gene: Achl_1950: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
*2
Arthrobacter sp. FB24 Site: position = -66 score = 4.95902 sequence = GGTGGTCTAGACCTGC Gene: Arth_2213: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family Gene: Arth_3517: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Beutenbergia cavernae DSM 12333 Site: position = -154 score = 4.75448 sequence = ATAGGTCTAGTCCACT Site: position = -34 score = 4.48399 sequence = TCTGGTCCAGACCACT Gene: Bcav_0433: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: JNB_15393: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: RSal33209_1580: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
| nagE_B |
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Arthrobacter sp. FB24 Site: position = -7 score = 4.15933 sequence = AGTGGACATGTCCAAA Site: position = -122 score = 4.68263 sequence = ACTGGTTATAACCAGT Gene: Arth_3515: PTS system N-acetylglucosamine-specific EIIB component |
Gene: Bcav_2635: PTS system N-acetylglucosamine-specific EIIB component |
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Gene: Jden_0938: PTS system N-acetylglucosamine-specific EIIB component |
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Gene: Ksed_16930: PTS system N-acetylglucosamine-specific EIIB component |
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PTS system N-acetylglucosamine-specific EIIB component |
| CRON 4. | |||||||||||||||
| namT |
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Beutenbergia cavernae DSM 12333 Site: position = -232 score = 4.48399 sequence = AGTGGTCTGGACCAGA Site: position = -112 score = 4.75448 sequence = AGTGGACTAGACCTAT Gene: Bcav_0434: Predicted N-acetylmannosamine ABC transport system, sugar-binding protein |
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Gene: Jden_0234: Predicted N-acetylmannosamine ABC transport system, sugar-binding protein |
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Predicted N-acetylmannosamine ABC transport system, sugar-binding protein |
| namU |
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Gene: Bcav_0435: Predicted N-acetylmannosamine ABC transport system, permease 1 |
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Gene: Jden_0235: Predicted N-acetylmannosamine ABC transport system, permease 1 |
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Predicted N-acetylmannosamine ABC transport system, permease 1 |
| namV |
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Gene: Bcav_0436: Predicted N-acetylmannosamine ABC transport system, permease 2 |
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Gene: Jden_0236: Predicted N-acetylmannosamine ABC transport system, permease 2 |
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Predicted N-acetylmannosamine ABC transport system, permease 2 |
| nanE |
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Gene: Bcav_0437: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
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N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
| nanK |
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Gene: Bcav_0438: N-acetylmannosamine kinase (EC 2.7.1.60) |
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Gene: Jden_0238: N-acetylmannosamine kinase (EC 2.7.1.60) |
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N-acetylmannosamine kinase (EC 2.7.1.60) |
| CRON 5. | |||||||||||||||
| nagK2 |
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Arthrobacter aurescens TC1 Site: position = -281 score = 4.59181 sequence = ATTGGTCTATGCCAAT Site: position = -257 score = 5.08935 sequence = GTTGGTCTAAACCAAT Gene: AAur_2054: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
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Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
| CRON 6. | |||||||||||||||
| ptsH |
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Arthrobacter aurescens TC1 Site: position = -14 score = 5.01771 sequence = GGAGGTCTAGACCAGT Gene: AAur_2212: Phosphotransferase system, phosphocarrier protein HPr |
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Arthrobacter chlorophenolicus A6 Site: position = -127 score = 4.92576 sequence = TCAGGTCTAGACCAGC Gene: Achl_1951: Phosphotransferase system, phosphocarrier protein HPr |
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Arthrobacter sp. FB24 Site: position = -116 score = 4.95902 sequence = GCAGGTCTAGACCACC Gene: Arth_2214: Phosphotransferase system, phosphocarrier protein HPr |
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Phosphotransferase system, phosphocarrier protein HPr |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |