Regulog FixJ - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator |
| Biological process: | Oxidative stress response |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - FixJ
- By TF family - LuxR
- By effector - Oxygen
- By pathway - Oxidative stress response
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | 3 | 2 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 1 | 1 |
| Bradyrhizobium sp. BTAi1 | 1 | 1 |
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | 2 | 2 |
| Mesorhizobium sp. BNC1 | 1 | 1 |
| Nitrobacter winogradskyi Nb-255 | 1 | 1 |
| Rhizobium etli CFN 42 | ||
| Rhizobium leguminosarum bv. viciae 3841 | 1 | 1 |
| Rhizobium sp. NGR234 | 3 | 2 |
| Rhodopseudomonas palustris CGA009 | 1 | 1 |
| Sinorhizobium meliloti 1021 | 4 | 4 |
| Xanthobacter autotrophicus Py2 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| SMc03253 |
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Gene: mlr6283: Predicted L-proline 3-hydroxylase |
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Sinorhizobium meliloti 1021 Site: position = -355 score = 4.95918 sequence = CTAGGTAGTTTCCCTTAG Gene: SMc03253: Predicted L-proline 3-hydroxylase |
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Predicted L-proline 3-hydroxylase |
| CRON 2. | ||||||||||||||||
| nifA |
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Azorhizobium caulinodans ORS 571 Site: position = -114 score = 3.07455 sequence = CTCCGCGGTTTCCATTAT Gene: AZC_1049: Nitrogen fixation transcriptional regulator NifA, Fis family |
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Gene: blr2037: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: BBta_5933: Nitrogen fixation transcriptional regulator NifA, Fis family |
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*2
Mesorhizobium loti MAFF303099 Site: position = -193 score = 3.10489 sequence = CTTCGGCGTTCTCTTCAA Gene: mll5857: Nitrogen fixation transcriptional regulator NifA, Fis family Gene: mll5837: Nitrogen fixation transcriptional regulator NifA, Fis family |
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Gene: RHE_PD00228: Nitrogen fixation transcriptional regulator NifA, Fis family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -70 score = 3.48233 sequence = CTTAGGAATATGCGTTAG Gene: pRL100196: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: NGR_a01260: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: RPA4632: Nitrogen fixation transcriptional regulator NifA, Fis family |
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Sinorhizobium meliloti 1021 Site: position = -154 score = 3.14249 sequence = TTACAAGAACCAACTTAC Gene: SMa0815: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: Xaut_0082: Nitrogen fixation transcriptional regulator NifA, Fis family |
Nitrogen fixation transcriptional regulator NifA, Fis family |
| AZC_1048 |
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Gene: AZC_1048: (FeS)4 cluster domain protein, co-localized with NifA |
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(FeS)4 cluster domain protein, co-localized with NifA |
| fixX |
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Rhizobium sp. NGR234 Site: position = -18 score = 3.42864 sequence = CTAAAGGGGAGCATTGAG Gene: NGR_a01250: Ferredoxin-like protein |
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Ferredoxin-like protein |
| CRON 3. | ||||||||||||||||
| fixK |
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Azorhizobium caulinodans ORS 571 Site: position = -118 score = 3.97564 sequence = CTCCGTAAAATCACCTAC Site: position = -104 score = 4.60637 sequence = CTACGCAATACTACTTAA Site: position = -90 score = 3.72939 sequence = TTAAGGGCTGGGCCCTAA Gene: AZC_4653: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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*4
Bradyrhizobium japonicum USDA 110 Gene: bll2109: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: bll3466: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: bll7696: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Site: position = -93 score = 5.05223 sequence = CTACGGGGTTCTACGTAA Site: position = -79 score = 4.16308 sequence = GTAAGGCACCCCCCTTAA Gene: bll2757: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
*5
Bradyrhizobium sp. BTAi1 Gene: BBta_p0192: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: BBta_7770: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: BBta_7766: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: BBta_7767: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Site: position = -102 score = 4.45272 sequence = CTACGTATATCTACGTAA Site: position = -88 score = 4.47452 sequence = GTAAGGGAACGTCCTTAA Gene: BBta_2786: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Mesorhizobium loti MAFF303099 Site: position = -89 score = 4.86332 sequence = CTAGGTAGTTTCCCGTAG Gene: mll6578: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Mesorhizobium sp. BNC1 Site: position = -86 score = 5.15919 sequence = CTACGTAGTTTCCCTTAG Gene: Meso_2220: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Nitrobacter winogradskyi Nb-255 Site: position = -102 score = 4.59818 sequence = CTCCGTAAGACCCCTTAG Site: position = -88 score = 4.04155 sequence = TTAGGAGGCTGCCCTTAG Gene: Nwi_1036: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Rhizobium sp. NGR234 Site: position = -89 score = 4.51255 sequence = CTACGGGGAATCCCGCAA Gene: NGR_b00800: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Rhodopseudomonas palustris CGA009 Site: position = -105 score = 5.08636 sequence = CTACGTAGACCTACTTAG Site: position = -91 score = 4.73872 sequence = TTAGGGGAACCCACTTAA Gene: RPA4250: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
*3
Sinorhizobium meliloti 1021 Site: position = -87 score = 4.78565 sequence = CTAAGTAGTTCCCTTTAG Gene: SMa0762: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Gene: SMa0662: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family Site: position = -87 score = 5.18727 sequence = CTAAGTAATTTCCCTTAG Gene: SMa1225: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
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Xanthobacter autotrophicus Py2 Site: position = -104 score = 4.58862 sequence = CTCCGTAAAACTACTTAA Site: position = -90 score = 4.4863 sequence = TTAAGGGCACCGACTTAA Gene: Xaut_1746: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |