Regulog LtbR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Leucine biosynthesis |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - LtbR
- By TF family - IclR
- By pathway - Leucine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidothermus cellulolyticus 11B | 3 | 2 |
| Nocardioides sp. JS614 | 3 | 2 |
| Propionibacterium acnes KPA171202 | ||
| Actinosynnema mirum DSM 43827 | 3 | 2 |
| Saccharomonospora viridis DSM 43017 | 3 | 2 |
| Saccharopolyspora erythraea NRRL 2338 | 3 | 2 |
| Nakamurella multipartita DSM 44233 | 3 | 2 |
| Frankia sp. CcI3 | 3 | 2 |
| Frankia sp. EAN1pec | 3 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| leuC |
*
Acidothermus cellulolyticus 11B Site: position = -43 score = 4.94733 sequence = GATCTCACAATGTGAGACG Gene: Acel_1591: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Nocardioides sp. JS614 Site: position = -99 score = 5.09769 sequence = CGTCTCAGATCATGGGATG Gene: Noca_3298: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
2
Propionibacterium acnes KPA171202 Gene: PPA1362: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Gene: PPA1363: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Actinosynnema mirum DSM 43827 Site: position = -86 score = 4.42576 sequence = TGTCCCACAAGCCGATACT Site: position = -65 score = 4.36398 sequence = CTTCCCATTGACTGGGAAG Gene: Amir_6006: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Saccharomonospora viridis DSM 43017 Site: position = -100 score = 4.48921 sequence = TGTCCCACAAAGCGATACT Site: position = -79 score = 4.42775 sequence = AATCTCGCGATTTGGGATA Gene: Svir_09060: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -97 score = 4.37335 sequence = TGTCCCACGTACCGATACT Site: position = -76 score = 4.6568 sequence = CTTCTCGTCATCTGGGAAG Gene: SACE_6144: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Nakamurella multipartita DSM 44233 Site: position = -98 score = 4.37335 sequence = TGTCCCATGAGGCGATACT Site: position = -77 score = 4.90737 sequence = ATTCCCACATAGTGAGATG Gene: Namu_1478: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Frankia sp. CcI3 Site: position = -78 score = 5.05224 sequence = CATCCCACATCATGAGACA Gene: Francci3_3621: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Frankia sp. EAN1pec Site: position = -154 score = 4.93302 sequence = CATCTCATCTCCTGAGATG Gene: Franean1_1113: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| leuD |
Gene: Acel_1590: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Noca_3297: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: PPA1361: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Amir_6005: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Svir_09070: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: SACE_6143: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Namu_1479: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Francci3_3620: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Franean1_1114: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
| CRON 2. | ||||||||||
| ltbR |
*
Acidothermus cellulolyticus 11B Site: position = -32 score = 4.94733 sequence = CGTCTCACATTGTGAGATC Gene: Acel_1592: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Nocardioides sp. JS614 Site: position = -32 score = 5.09769 sequence = CATCCCATGATCTGAGACG Gene: Noca_3299: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
Gene: PPA1364: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Actinosynnema mirum DSM 43827 Site: position = -32 score = 4.36398 sequence = CTTCCCAGTCAATGGGAAG Site: position = -11 score = 4.42576 sequence = AGTATCGGCTTGTGGGACA Gene: Amir_6007: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Saccharomonospora viridis DSM 43017 Site: position = -107 score = 4.42775 sequence = TATCCCAAATCGCGAGATT Site: position = -86 score = 4.48921 sequence = AGTATCGCTTTGTGGGACA Gene: Svir_09050: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -80 score = 4.6568 sequence = CTTCCCAGATGACGAGAAG Site: position = -59 score = 4.37335 sequence = AGTATCGGTACGTGGGACA Gene: SACE_6145: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Nakamurella multipartita DSM 44233 Site: position = -32 score = 4.90737 sequence = CATCTCACTATGTGGGAAT Site: position = -11 score = 4.37335 sequence = AGTATCGCCTCATGGGACA Gene: Namu_1477: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Frankia sp. CcI3 Site: position = -32 score = 5.05224 sequence = TGTCTCATGATGTGGGATG Gene: Francci3_3622: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Frankia sp. EAN1pec Site: position = 79 score = 4.93302 sequence = CATCTCAGGAGATGAGATG Gene: Franean1_1112: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
Leucine biosynthesis transcriptional regulator LtbR, IclR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |