Regulog BioQ - Mycobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By trascription factor - BioQ
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium abscessus ATCC 19977 | 6 | 3 |
| Mycobacterium avium 104 | ||
| Mycobacterium flavescens PYR-GCK | 6 | 3 |
| Mycobacterium leprae TN | ||
| Mycobacterium marinum M | ||
| Mycobacterium smegmatis str. MC2 155 | 6 | 3 |
| Mycobacterium sp. JLS | 6 | 3 |
| Mycobacterium tuberculosis H37Rv | ||
| Mycobacterium vanbaalenii PYR-1 | 6 | 3 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| bioB |
*
Mycobacterium abscessus ATCC 19977 Site: position = -54 score = 5.74163 sequence = CCTGAACACCGTTCAGG Gene: MAB_2684c: Biotin synthase (EC 2.8.1.6) |
Gene: MAV_3196: Biotin synthase (EC 2.8.1.6) |
*
Mycobacterium flavescens PYR-GCK Site: position = -61 score = 5.85867 sequence = CCTGAACGGTGTTCAAG Gene: Mflv_3624: Biotin synthase (EC 2.8.1.6) |
Gene: ML1220: Biotin synthase (EC 2.8.1.6) |
Gene: MMAR_2387: Biotin synthase (EC 2.8.1.6) |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -52 score = 5.85867 sequence = CCTGAACACCGTTCAAG Site: position = -32 score = 5.43635 sequence = CCTGAACACCGTTCAGC Gene: MSMEG_3194: Biotin synthase (EC 2.8.1.6) |
*
Mycobacterium sp. JLS Site: position = -110 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: Mjls_3090: Biotin synthase (EC 2.8.1.6) |
Gene: Rv1589: Biotin synthase (EC 2.8.1.6) |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -62 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: Mvan_2793: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| MAB_2683c |
Gene: MAB_2683c: hypothetical protein |
Gene: MAV_3195: hypothetical protein |
Gene: Mflv_3623: hypothetical protein |
Gene: ML1221: hypothetical protein |
Gene: MMAR_5574: hypothetical protein |
Gene: MSMEG_3195: hypothetical protein |
Gene: Mjls_3089: hypothetical protein |
Gene: Rv1590: hypothetical protein |
Gene: Mvan_2794: hypothetical protein |
hypothetical protein |
| MAB_2682c |
Gene: MAB_2682c: hypothetical protein Rv1591 |
Gene: MAV_3193: hypothetical protein Rv1591 |
Gene: Mflv_3622: hypothetical protein Rv1591 |
Gene: ML1222: hypothetical protein Rv1591 |
Gene: MMAR_2388: hypothetical protein Rv1591 |
Gene: MSMEG_3196: hypothetical protein Rv1591 |
Gene: Mjls_3088: hypothetical protein Rv1591 |
Gene: Rv1591: hypothetical protein Rv1591 |
Gene: Mvan_2795: hypothetical protein Rv1591 |
hypothetical protein Rv1591 |
| CRON 2. | ||||||||||
| bioF |
*
Mycobacterium abscessus ATCC 19977 Site: position = -24 score = 6.1646 sequence = CCTGAACACCGTTCAGG Gene: MAB_2687c: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MAV_3205: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Mycobacterium flavescens PYR-GCK Site: position = -43 score = 6.073 sequence = CCTGAACGGTGTTCAAG Gene: Mflv_3628: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: ML1217: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MMAR_2384: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -133 score = 5.88342 sequence = CCTGAACGGTGTTCAAT Gene: MSMEG_3189: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Mycobacterium sp. JLS Site: position = -43 score = 5.88342 sequence = CCTGAACGGTGTTCAAT Gene: Mjls_3094: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Rv1569: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -109 score = 5.42218 sequence = CCTGAACGGTGTTTAAT Gene: Mvan_2789: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
Gene: MAB_2686c: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MAV_3204: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mflv_3627: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: ML1218: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MMAR_2385: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MSMEG_3190: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mjls_3093: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Rv1570: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mvan_2790: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 3. | ||||||||||
| bioQ |
*
Mycobacterium abscessus ATCC 19977 Site: position = -24 score = 6.1646 sequence = CCTGAACGGTGTTCAGG Gene: MAB_2685: Biotin repressor, TetR family |
|
*
Mycobacterium flavescens PYR-GCK Site: position = -30 score = 6.073 sequence = CTTGAACACCGTTCAGG Gene: Mflv_3625: Biotin repressor, TetR family |
|
|
*
Mycobacterium smegmatis str. MC2 155 Site: position = -30 score = 6.073 sequence = CTTGAACGGTGTTCAGG Gene: MSMEG_3193: Biotin repressor, TetR family |
*
Mycobacterium sp. JLS Site: position = -30 score = 5.88342 sequence = ATTGAACACCGTTCAGG Gene: Mjls_3091: Biotin repressor, TetR family |
|
*
Mycobacterium vanbaalenii PYR-1 Site: position = -30 score = 5.88342 sequence = ATTGAACACCGTTCAGG Gene: Mvan_2792: Biotin repressor, TetR family |
Biotin repressor, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |