Regulog CsoR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | CsoR |
| Regulation mode: | repressor |
| Biological process: | Copper resistance |
| Effector: | Copper ion, (Cu+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - CsoR
- By taxonomy - Micrococcineae
- By TF family - CsoR
- By effector - Copper ion, (Cu+)
- By pathway - Copper resistance
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 6 | 3 |
| Arthrobacter chlorophenolicus A6 | 4 | 2 |
| Arthrobacter sp. FB24 | 4 | 2 |
| Beutenbergia cavernae DSM 12333 | 5 | 3 |
| Brachybacterium faecium DSM 4810 | 5 | 2 |
| Brevibacterium linens BL2 | 3 | 1 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | ||
| Janibacter sp. HTCC2649 | 4 | 1 |
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | 3 | 1 |
| Kytococcus sedentarius DSM 20547 | 6 | 2 |
| Leifsonia xyli subsp. xyli str. CTCB07 | ||
| Renibacterium salmoninarum ATCC 33209 | ||
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| copB |
Gene: AAur_pTC20028: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Arthrobacter chlorophenolicus A6 Site: position = -147 score = 6.52469 sequence = ATACCCCCTAGGGGTAT Gene: Achl_3030: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Arthrobacter sp. FB24 Site: position = -67 score = 6.66601 sequence = ATACCCCCTGGGGGTAT Gene: Arth_0197: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Beutenbergia cavernae DSM 12333 Site: position = -75 score = 6.52469 sequence = ATACCCCTAGGGGGTAT Gene: Bcav_1043: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Brachybacterium faecium DSM 4810 Site: position = -61 score = 6.52469 sequence = ATACCCCCTAGGGGTAT Gene: Bfae_31400: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Copper-translocating P-type ATPase (EC 3.6.3.4) |
| CRON 2. | |||||||||||||||
| copP |
*2
Arthrobacter aurescens TC1 Site: position = -144 score = 6.3677 sequence = ATACCCCCATGGGGTAT Gene: AAur_pTC10138: Heavy metal transport/detoxification protein Site: position = -68 score = 6.25671 sequence = ATACCCACTGGGGGTAT Site: position = -35 score = 6.16027 sequence = GTACCCCCTAGGGGTAT Gene: AAur_pTC10131: Heavy metal transport/detoxification protein |
Gene: Achl_3872: Heavy metal transport/detoxification protein |
Gene: Arth_4098: Heavy metal transport/detoxification protein |
Gene: Bcav_4022: Heavy metal transport/detoxification protein |
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Brachybacterium faecium DSM 4810 Site: position = -72 score = 6.38028 sequence = ATACCCCTCGGGGGTAT Site: position = -40 score = 5.97098 sequence = ATACCCCTCGAGGGTAT Gene: Bfae_19780: Heavy metal transport/detoxification protein |
Gene: BlinB01000849: Heavy metal transport/detoxification protein |
Gene: CMM_1036: Heavy metal transport/detoxification protein |
Gene: JNB_12024: Heavy metal transport/detoxification protein |
Gene: Jden_2500: Heavy metal transport/detoxification protein |
Gene: KRH_01190: Heavy metal transport/detoxification protein |
*2
Kytococcus sedentarius DSM 20547 Site: position = -72 score = 6.5216 sequence = ATACCCCCGGGGGGTAT Gene: Ksed_04940: Heavy metal transport/detoxification protein Site: position = -94 score = 5.90848 sequence = ATACCCTGAGGGGGTAT Gene: Ksed_10610: Heavy metal transport/detoxification protein |
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Gene: RSal33209_0581: Heavy metal transport/detoxification protein |
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Heavy metal transport/detoxification protein |
| Bfae_19790 |
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Gene: Bfae_19790: Hypothetical protein |
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Hypothetical protein |
| copA |
4
Arthrobacter aurescens TC1 Gene: AAur_pTC20165: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_pTC10132: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_4095: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_pTC10139: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: Achl_3873: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: Arth_4099: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: Bcav_4018: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: Bfae_19800: Copper-translocating P-type ATPase (EC 3.6.3.4) |
2
Brevibacterium linens BL2 Gene: BlinB01000848: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: BlinB01000343: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: CMM_1037: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: JNB_12034: Copper-translocating P-type ATPase (EC 3.6.3.4) |
2
Jonesia denitrificans DSM 20603 Gene: Jden_2501: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: Jden_0919: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: KRH_01180: Copper-translocating P-type ATPase (EC 3.6.3.4) |
2
Kytococcus sedentarius DSM 20547 Gene: Ksed_04950: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: Ksed_10590: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: RSal33209_0580: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Copper-translocating P-type ATPase (EC 3.6.3.4) |
| csoR |
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Arthrobacter aurescens TC1 Site: position = -53 score = 6.30159 sequence = ATACCCCCAGGGGGTAC Site: position = -28 score = 6.11539 sequence = ATACCCCCTATGGGTAT Gene: AAur_4093: Copper resistance transcriptional regulator CsoR, CsoR family |
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Arthrobacter chlorophenolicus A6 Site: position = -53 score = 6.30159 sequence = ATACCCCCTGGGGGTAC Site: position = -28 score = 5.96954 sequence = ATACCCCGACGGGGTAT Gene: Achl_3871: Copper resistance transcriptional regulator CsoR, CsoR family |
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Arthrobacter sp. FB24 Site: position = -28 score = 6.38337 sequence = ATACCCCTTAGGGGTAT Gene: Arth_4097: Copper resistance transcriptional regulator CsoR, CsoR family |
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Beutenbergia cavernae DSM 12333 Site: position = -147 score = 5.95336 sequence = ATACCCCCTCGGGGTAC Site: position = -113 score = 6.38028 sequence = ATACCCCTCGGGGGTAT Site: position = -44 score = 6.08197 sequence = ATACCCCTGTGGGGTAT Gene: Bcav_4021: Copper resistance transcriptional regulator CsoR, CsoR family |
Gene: Bfae_19810: Copper resistance transcriptional regulator CsoR, CsoR family |
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Brevibacterium linens BL2 Site: position = -28 score = 5.9584 sequence = ATACCCTAAGGGGGTAT Gene: BlinB01000850: Copper resistance transcriptional regulator CsoR, CsoR family |
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Janibacter sp. HTCC2649 Site: position = -28 score = 5.81399 sequence = ATACCCAAGGGGGGTAT Gene: JNB_12019: Copper resistance transcriptional regulator CsoR, CsoR family |
2
Jonesia denitrificans DSM 20603 Gene: Jden_0918: Copper resistance transcriptional regulator CsoR, CsoR family Gene: Jden_2499: Copper resistance transcriptional regulator CsoR, CsoR family |
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Kocuria rhizophila DC2201 Site: position = -20 score = 6.52469 sequence = ATACCCCCAAGGGGTAT Gene: KRH_01200: Copper resistance transcriptional regulator CsoR, CsoR family |
Gene: Ksed_10580: Copper resistance transcriptional regulator CsoR, CsoR family |
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Gene: RSal33209_0582: Copper resistance transcriptional regulator CsoR, CsoR family |
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Copper resistance transcriptional regulator CsoR, CsoR family |
| JNB_12029 |
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Gene: JNB_12029: Putative secreted protein |
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Putative secreted protein |
| Ksed_10600 |
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Gene: Ksed_10600: Hypothetical protein |
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Hypothetical protein |
| Bcav_4019 |
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Beutenbergia cavernae DSM 12333 Site: position = -247 score = 5.95336 sequence = GTACCCCGAGGGGGTAT Gene: Bcav_4019: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |