Regulog CsoR - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	CsoR
Regulation mode:	repressor
Biological process:	Copper resistance
Effector:	Copper ion, (Cu+)
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 23 sites [see more]

Member of regulog collections

By trascription factor - CsoR
By taxonomy - Micrococcineae
By TF family - CsoR
By effector - Copper ion, (Cu+)
By pathway - Copper resistance

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	6	3
Arthrobacter chlorophenolicus A6	4	2
Arthrobacter sp. FB24	4	2
Beutenbergia cavernae DSM 12333	5	3
Brachybacterium faecium DSM 4810	5	2
Brevibacterium linens BL2	3	1
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649	4	1
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201	3	1
Kytococcus sedentarius DSM 20547	6	2
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
copB	Arthrobacter aurescens TC1 Gene: AAur_pTC20028: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Arthrobacter chlorophenolicus A6 Site: position = -147 score = 6.52469 sequence = ATACCCCCTAGGGGTAT Gene: Achl_3030: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Arthrobacter sp. FB24 Site: position = -67 score = 6.66601 sequence = ATACCCCCTGGGGGTAT Gene: Arth_0197: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Beutenbergia cavernae DSM 12333 Site: position = -75 score = 6.52469 sequence = ATACCCCTAGGGGGTAT Gene: Bcav_1043: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Brachybacterium faecium DSM 4810 Site: position = -61 score = 6.52469 sequence = ATACCCCCTAGGGGTAT Gene: Bfae_31400: Copper-translocating P-type ATPase (EC 3.6.3.4)	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Copper-translocating P-type ATPase (EC 3.6.3.4)

CRON 2.
copP	2 Arthrobacter aurescens TC1* Site: position = -144 score = 6.3677 sequence = ATACCCCCATGGGGTAT Gene: AAur_pTC10138: Heavy metal transport/detoxification protein Site: position = -68 score = 6.25671 sequence = ATACCCACTGGGGGTAT Site: position = -35 score = 6.16027 sequence = GTACCCCCTAGGGGTAT Gene: AAur_pTC10131: Heavy metal transport/detoxification protein	Arthrobacter chlorophenolicus A6 Gene: Achl_3872: Heavy metal transport/detoxification protein	Arthrobacter sp. FB24 Gene: Arth_4098: Heavy metal transport/detoxification protein	Beutenbergia cavernae DSM 12333 Gene: Bcav_4022: Heavy metal transport/detoxification protein	* Brachybacterium faecium DSM 4810 Site: position = -72 score = 6.38028 sequence = ATACCCCTCGGGGGTAT Site: position = -40 score = 5.97098 sequence = ATACCCCTCGAGGGTAT Gene: Bfae_19780: Heavy metal transport/detoxification protein	Brevibacterium linens BL2 Gene: BlinB01000849: Heavy metal transport/detoxification protein	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1036: Heavy metal transport/detoxification protein	Janibacter sp. HTCC2649 Gene: JNB_12024: Heavy metal transport/detoxification protein	Jonesia denitrificans DSM 20603 Gene: Jden_2500: Heavy metal transport/detoxification protein	Kocuria rhizophila DC2201 Gene: KRH_01190: Heavy metal transport/detoxification protein	2 Kytococcus sedentarius DSM 20547* Site: position = -72 score = 6.5216 sequence = ATACCCCCGGGGGGTAT Gene: Ksed_04940: Heavy metal transport/detoxification protein Site: position = -94 score = 5.90848 sequence = ATACCCTGAGGGGGTAT Gene: Ksed_10610: Heavy metal transport/detoxification protein	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0581: Heavy metal transport/detoxification protein	Tropheryma whipplei str. Twist	Heavy metal transport/detoxification protein
Bfae_19790	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810 Gene: Bfae_19790: Hypothetical protein	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Hypothetical protein
copA	4 Arthrobacter aurescens TC1 Gene: AAur_pTC20165: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_pTC10132: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_4095: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: AAur_pTC10139: Copper-translocating P-type ATPase (EC 3.6.3.4)	Arthrobacter chlorophenolicus A6 Gene: Achl_3873: Copper-translocating P-type ATPase (EC 3.6.3.4)	Arthrobacter sp. FB24 Gene: Arth_4099: Copper-translocating P-type ATPase (EC 3.6.3.4)	Beutenbergia cavernae DSM 12333 Gene: Bcav_4018: Copper-translocating P-type ATPase (EC 3.6.3.4)	Brachybacterium faecium DSM 4810 Gene: Bfae_19800: Copper-translocating P-type ATPase (EC 3.6.3.4)	2 Brevibacterium linens BL2 Gene: BlinB01000848: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: BlinB01000343: Copper-translocating P-type ATPase (EC 3.6.3.4)	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1037: Copper-translocating P-type ATPase (EC 3.6.3.4)	Janibacter sp. HTCC2649 Gene: JNB_12034: Copper-translocating P-type ATPase (EC 3.6.3.4)	2 Jonesia denitrificans DSM 20603 Gene: Jden_2501: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: Jden_0919: Copper-translocating P-type ATPase (EC 3.6.3.4)	Kocuria rhizophila DC2201 Gene: KRH_01180: Copper-translocating P-type ATPase (EC 3.6.3.4)	2 Kytococcus sedentarius DSM 20547 Gene: Ksed_04950: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: Ksed_10590: Copper-translocating P-type ATPase (EC 3.6.3.4)	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0580: Copper-translocating P-type ATPase (EC 3.6.3.4)	Tropheryma whipplei str. Twist	Copper-translocating P-type ATPase (EC 3.6.3.4)
csoR	* Arthrobacter aurescens TC1 Site: position = -53 score = 6.30159 sequence = ATACCCCCAGGGGGTAC Site: position = -28 score = 6.11539 sequence = ATACCCCCTATGGGTAT Gene: AAur_4093: Copper resistance transcriptional regulator CsoR, CsoR family	* Arthrobacter chlorophenolicus A6 Site: position = -53 score = 6.30159 sequence = ATACCCCCTGGGGGTAC Site: position = -28 score = 5.96954 sequence = ATACCCCGACGGGGTAT Gene: Achl_3871: Copper resistance transcriptional regulator CsoR, CsoR family	* Arthrobacter sp. FB24 Site: position = -28 score = 6.38337 sequence = ATACCCCTTAGGGGTAT Gene: Arth_4097: Copper resistance transcriptional regulator CsoR, CsoR family	* Beutenbergia cavernae DSM 12333 Site: position = -147 score = 5.95336 sequence = ATACCCCCTCGGGGTAC Site: position = -113 score = 6.38028 sequence = ATACCCCTCGGGGGTAT Site: position = -44 score = 6.08197 sequence = ATACCCCTGTGGGGTAT Gene: Bcav_4021: Copper resistance transcriptional regulator CsoR, CsoR family	Brachybacterium faecium DSM 4810 Gene: Bfae_19810: Copper resistance transcriptional regulator CsoR, CsoR family	* Brevibacterium linens BL2 Site: position = -28 score = 5.9584 sequence = ATACCCTAAGGGGGTAT Gene: BlinB01000850: Copper resistance transcriptional regulator CsoR, CsoR family	Clavibacter michiganensis subsp. michiganensis NCPPB 382	* Janibacter sp. HTCC2649 Site: position = -28 score = 5.81399 sequence = ATACCCAAGGGGGGTAT Gene: JNB_12019: Copper resistance transcriptional regulator CsoR, CsoR family	2 Jonesia denitrificans DSM 20603 Gene: Jden_0918: Copper resistance transcriptional regulator CsoR, CsoR family Gene: Jden_2499: Copper resistance transcriptional regulator CsoR, CsoR family	* Kocuria rhizophila DC2201 Site: position = -20 score = 6.52469 sequence = ATACCCCCAAGGGGTAT Gene: KRH_01200: Copper resistance transcriptional regulator CsoR, CsoR family	Kytococcus sedentarius DSM 20547 Gene: Ksed_10580: Copper resistance transcriptional regulator CsoR, CsoR family	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0582: Copper resistance transcriptional regulator CsoR, CsoR family	Tropheryma whipplei str. Twist	Copper resistance transcriptional regulator CsoR, CsoR family
JNB_12029	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649 Gene: JNB_12029: Putative secreted protein	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Putative secreted protein
Ksed_10600	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547 Gene: Ksed_10600: Hypothetical protein	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Hypothetical protein
Bcav_4019	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	* Beutenbergia cavernae DSM 12333 Site: position = -247 score = 5.95336 sequence = GTACCCCGAGGGGGTAT Gene: Bcav_4019: Hypothetical protein	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CsoR - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --