Regulog BioQ - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By trascription factor - BioQ
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | ||
| Arthrobacter chlorophenolicus A6 | ||
| Arthrobacter sp. FB24 | ||
| Beutenbergia cavernae DSM 12333 | ||
| Brachybacterium faecium DSM 4810 | ||
| Brevibacterium linens BL2 | 8 | 3 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 4 | 2 |
| Janibacter sp. HTCC2649 | ||
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | 5 | 2 |
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | 7 | 2 |
| Renibacterium salmoninarum ATCC 33209 | 9 | 2 |
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| bioY |
Gene: AAur_2114: Substrate-specific component BioY of biotin ECF transporter |
Gene: Achl_1855: Substrate-specific component BioY of biotin ECF transporter |
Gene: Arth_2113: Substrate-specific component BioY of biotin ECF transporter |
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Brevibacterium linens BL2 Site: position = -21 score = 5.97442 sequence = CCTGAACAGTGTTCAGT Gene: BlinB01002267: Substrate-specific component BioY of biotin ECF transporter |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -65 score = 5.78156 sequence = AGTGAACGCCGTTCAGG Site: position = -50 score = 5.45395 sequence = GGTGAACATCGTTCAGG Gene: CMM_1625: Substrate-specific component BioY of biotin ECF transporter |
Gene: JNB_15728: Substrate-specific component BioY of biotin ECF transporter |
Gene: Jden_1159: Substrate-specific component BioY of biotin ECF transporter |
Gene: KRH_12340: Substrate-specific component BioY of biotin ECF transporter |
Gene: Ksed_01740: Substrate-specific component BioY of biotin ECF transporter |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -44 score = 5.84457 sequence = AGTGAACGCTGTTCAGG Site: position = -29 score = 5.69988 sequence = GGTGAACACCGTTCAGT Gene: Lxx20880: Substrate-specific component BioY of biotin ECF transporter |
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Renibacterium salmoninarum ATCC 33209 Site: position = -113 score = 5.48572 sequence = ATTGAACCCTGTTCAAT Gene: RSal33209_2106: Substrate-specific component BioY of biotin ECF transporter |
Gene: TW211: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| yhfT |
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Gene: Lxx20870: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| yhfS |
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Gene: Lxx20900: acetyl-coA acyltransferase |
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acetyl-coA acyltransferase |
| bioM |
Gene: AAur_2113: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Achl_1854: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Arth_2112: ATPase component BioM of energizing module of biotin ECF transporter |
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Gene: BlinB01002268: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: CMM_1626: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: JNB_15723: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Jden_1158: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: KRH_12330: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Ksed_01750: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Lxx20910: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: RSal33209_2107: ATPase component BioM of energizing module of biotin ECF transporter |
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ATPase component BioM of energizing module of biotin ECF transporter |
| bioN |
Gene: AAur_2111: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Achl_1853: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Arth_2111: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Gene: BlinB01002269: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: CMM_1627: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: JNB_15718: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Jden_1157: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: KRH_12320: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Ksed_01760: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Lxx20920: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: RSal33209_2108: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Transmembrane component BioN of energizing module of biotin ECF transporter |
| CMM_2958 |
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Gene: Lxx20930: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||||||
| bioB |
Gene: AAur_1091: Biotin synthase (EC 2.8.1.6) |
Gene: Achl_0984: Biotin synthase (EC 2.8.1.6) |
Gene: Arth_0875: Biotin synthase (EC 2.8.1.6) |
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*2
Brevibacterium linens BL2 Site: position = -23 score = 5.90758 sequence = CCTGAACAGTGTTCAAT Gene: BlinB01003681: Biotin synthase (EC 2.8.1.6) Site: position = -68 score = 5.90758 sequence = ATTGAACACTGTTCAGG Gene: BlinB01003562: Biotin synthase (EC 2.8.1.6) |
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Kocuria rhizophila DC2201 Site: position = -8 score = 5.63854 sequence = ATTGAACAATGTTCAAG Site: position = -26 score = 5.84457 sequence = CCTGAACACCGTTCAAT Gene: KRH_02440: Biotin synthase (EC 2.8.1.6) |
Gene: Ksed_26490: Biotin synthase (EC 2.8.1.6) |
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Renibacterium salmoninarum ATCC 33209 Site: position = -8 score = 5.5208 sequence = TTTGAACAGTGTTCAAT Gene: RSal33209_0557: Biotin synthase (EC 2.8.1.6) |
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Biotin synthase (EC 2.8.1.6) |
| bioA |
Gene: AAur_1089: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: BlinB01003680: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: KRH_02450: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: RSal33209_0558: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| RSal33209_0559 |
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Gene: RSal33209_0559: hypothetical membrane protein |
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hypothetical membrane protein |
| bioF |
Gene: AAur_1088: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: BlinB01003679: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: KRH_02460: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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2
Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0560: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Gene: RSal33209_0561: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
Gene: AAur_1087: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: BlinB01003678: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: KRH_02470: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: RSal33209_0562: Dethiobiotin synthetase (EC 6.3.3.3) |
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Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 3. | |||||||||||||||
| bioQ |
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*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -47 score = 5.45395 sequence = CCTGAACGATGTTCACC Site: position = -32 score = 5.78156 sequence = CCTGAACGGCGTTCACT Gene: CMM_1624: Biotin repressor, TetR family |
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Kocuria rhizophila DC2201 Site: position = -253 score = 5.84457 sequence = ATTGAACGGTGTTCAGG Site: position = -271 score = 5.63854 sequence = CTTGAACATTGTTCAAT Gene: KRH_02430: Biotin repressor, TetR family |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -43 score = 5.69988 sequence = ACTGAACGGTGTTCACC Site: position = -28 score = 5.84457 sequence = CCTGAACAGCGTTCACT Gene: Lxx20890: Biotin repressor, TetR family |
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Biotin repressor, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |