Regulog TauR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Taurine utilization
Effector:	Taurine
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR
By effector - Taurine
By pathway - Taurine utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1	6	3
Delftia acidovorans SPH-1	10	3
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	5	2
Verminephrobacter eiseniae EF01-2	11	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
odpA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -112 score = 6.29975 sequence = CTGGCTCCTA-(13)-GTGGCCCCCG Gene: Daci_5671: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = -156 score = 6.60705 sequence = CTGGCCCTGC-(13)-TTGGCTCTTC Gene: Veis_4290: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
oppB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5670: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4291: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
oppC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5669: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4292: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
oppD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5668: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4293: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
oppF	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5667: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4294: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)	Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
COG1574	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5666: Amidohydrolase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4295: Amidohydrolase	Amidohydrolase
COG0523	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5665: Cobalamin synthesis protein/P47K	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4296: Cobalamin synthesis protein/P47K	Cobalamin synthesis protein/P47K

CRON 2.
tauA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -213 score = 9.03134 sequence = CTGGACCTAA-(13)-CTGGCCCTAC Gene: CtesDRAFT_2755: Taurine ABC transporter, taurine-binding periplasmic protein TauA	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -90 score = 6.8353 sequence = CTGGCTCCAT-(13)-CTGGTACTTC Gene: Vapar_3846: Taurine ABC transporter, taurine-binding periplasmic protein TauA	* Verminephrobacter eiseniae EF01-2 Site: position = -162 score = 6.53156 sequence = CTGGCTCCAT-(13)-CTGGTACTTT Gene: Veis_4286: Taurine ABC transporter, taurine-binding periplasmic protein TauA	Taurine ABC transporter, taurine-binding periplasmic protein TauA
tauB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0046: Taurine ABC transporter, ATP-binding protein TauB	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2756: Taurine ABC transporter, ATP-binding protein TauB	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3845: Taurine ABC transporter, ATP-binding protein TauB	Verminephrobacter eiseniae EF01-2 Gene: Veis_4285: Taurine ABC transporter, ATP-binding protein TauB	Taurine ABC transporter, ATP-binding protein TauB
tauC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0047: Taurine ABC transporter, permease protein TauC	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2757: Taurine ABC transporter, permease protein TauC	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3844: Taurine ABC transporter, permease protein TauC	Verminephrobacter eiseniae EF01-2 Gene: Veis_4284: Taurine ABC transporter, permease protein TauC	Taurine ABC transporter, permease protein TauC

CRON 3.
tauX	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -149 score = 6.6204 sequence = TTGGACTTAA-(13)-CTGGTTCTAC Gene: CtesDRAFT_2753: Putative small subunit of taurine dehydrogenase	* Delftia acidovorans SPH-1 Site: position = -144 score = 8.16031 sequence = CTGGACCTAA-(13)-CTGGTTCTAA Gene: Daci_2020: Putative small subunit of taurine dehydrogenase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -85 score = 7.05358 sequence = CTGGCTCGGT-(13)-CTGGCCCTAT Gene: Vapar_3849: Putative small subunit of taurine dehydrogenase	Verminephrobacter eiseniae EF01-2	Putative small subunit of taurine dehydrogenase
tauY	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -174 score = 7.60985 sequence = CTGGCTCCAT-(13)-GTGGCCCTAA Gene: CtesDRAFT_2754: Taurine dehydrogenase, large subunit	* Delftia acidovorans SPH-1 Site: position = -172 score = 7.38041 sequence = CTGGCTCTAT-(13)-GTGGCGCTAA Gene: Daci_2019: Taurine dehydrogenase, large subunit	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3850: Taurine dehydrogenase, large subunit	* Verminephrobacter eiseniae EF01-2 Site: position = -239 score = 4.97829 sequence = GTGCGCCAGG-(13)-CTGGCACGCC Gene: Veis_4289: Taurine dehydrogenase, large subunit	Taurine dehydrogenase, large subunit
gabP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2752: Gamma-aminobutyrate permease	Delftia acidovorans SPH-1 Gene: Daci_2021: Gamma-aminobutyrate permease	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Gamma-aminobutyrate permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TauR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --