Regulog SPOA0375 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217	5	2
Silicibacter TM1040
Silicibacter pomeroyi DSS-3	5	2
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
ROS217_02040	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -139 score = 9.19225 sequence = CTGTCCCCTT-(12)-CTGTCCCTTC Gene: ROS217_02040: TRAP-type C4-dicarboxylate transport system, periplasmic component	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -96 score = 8.79108 sequence = CTGTCACCCG-(12)-CTGTCACTTT Gene: SPOA0374: TRAP-type C4-dicarboxylate transport system, periplasmic component	Sulfitobacter sp. EE-36	TRAP-type C4-dicarboxylate transport system, periplasmic component
ROS217_02045	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_02045: TRAP-type C4-dicarboxylate transport system, large permease component	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0373: TRAP-type C4-dicarboxylate transport system, large permease component	Sulfitobacter sp. EE-36	TRAP-type C4-dicarboxylate transport system, large permease component
ROS217_02050	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_02050: TRAP-type C4-dicarboxylate transport system, small permease component	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0372: TRAP-type C4-dicarboxylate transport system, small permease component	Sulfitobacter sp. EE-36	TRAP-type C4-dicarboxylate transport system, small permease component

CRON 2.
COG596 (MhpC)	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -233 score = 8.4344 sequence = CTGTCCCTTC-(12)-CTGTCTCTCG Gene: ROS217_02030: Epoxide hydrolase domain protein	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = 16 score = 8.4344 sequence = CTGTCCCTTC-(12)-CTGTCTCTCG Gene: SPOA0376: Epoxide hydrolase domain protein	Sulfitobacter sp. EE-36	Epoxide hydrolase domain protein
COG1012 (PutA)	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_02025: NAD-dependent Aldehyde dehydrogenase (EC 1.2.1.3)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0377: NAD-dependent Aldehyde dehydrogenase (EC 1.2.1.3)	Sulfitobacter sp. EE-36	NAD-dependent Aldehyde dehydrogenase (EC 1.2.1.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SPOA0375 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --