Regulog TauR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Taurine utilization |
| Effector: | Taurine |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/MocR
- By effector - Taurine
- By pathway - Taurine utilization
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 7 | 3 |
| Loktanella vestfoldensis SKA53 | 7 | 1 |
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | 10 | 2 |
| Rhodobacter sphaeroides 2.4.1 | 8 | 1 |
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | 8 | 2 |
| Roseovarius nubinhibens ISM | 6 | 2 |
| Roseovarius sp. 217 | 8 | 2 |
| Silicibacter TM1040 | 5 | 2 |
| Silicibacter pomeroyi DSS-3 | 6 | 2 |
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| tauK |
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Paracoccus denitrificans PD1222 Site: position = -114 score = 8.55663 sequence = CTGGACCTAT-(12)-CTGGACATAT Gene: Pden_1647: TRAP-type taurine transporter, periplasmatic component |
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Rhodobacter sphaeroides 2.4.1 Site: position = -55 score = 8.05126 sequence = CTGGACCTAC-(12)-CTGGACATAT Gene: RSP_4016: TRAP-type taurine transporter, periplasmatic component |
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TRAP-type taurine transporter, periplasmatic component |
| tauM |
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Gene: Pden_1646: TRAP-type taurine transporter, small permease component |
Gene: RSP_4015: TRAP-type taurine transporter, small permease component |
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TRAP-type taurine transporter, small permease component |
| tauL |
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Gene: Pden_1645: TRAP-type taurine transporter, large permease component |
Gene: RSP_4014: TRAP-type taurine transporter, large permease component |
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TRAP-type taurine transporter, large permease component |
| tauX |
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Gene: Pden_1644: Putative small subunit of taurine dehydrogenase |
Gene: RSP_4013: Putative small subunit of taurine dehydrogenase |
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Putative small subunit of taurine dehydrogenase |
| tauY |
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Gene: OB2597_11731: Taurine dehydrogenase, large subunit |
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Gene: Pden_1643: Taurine dehydrogenase, large subunit |
Gene: RSP_4012: Taurine dehydrogenase, large subunit |
Gene: RB2654_20618: Taurine dehydrogenase, large subunit |
Gene: MED193_13493: Taurine dehydrogenase, large subunit |
Gene: ISM_07845: Taurine dehydrogenase, large subunit |
Gene: ROS217_09420: Taurine dehydrogenase, large subunit |
Gene: TM1040_2980: Taurine dehydrogenase, large subunit |
Gene: SPO3465: Taurine dehydrogenase, large subunit |
Gene: EE36_06568: Taurine dehydrogenase, large subunit |
Taurine dehydrogenase, large subunit |
| xsc |
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Jannaschia sp. CCS1 Site: position = -106 score = 8.55195 sequence = CTGGCCTTAT-(12)-TTGGCCCTAC Gene: Jann_2846: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Gene: Pden_1642: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
Gene: RSP_4011: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Roseobacter sp. MED193 Site: position = -116 score = 9.10021 sequence = TTGGATCTAT-(12)-CTGGCCCTAT Gene: MED193_12208: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Roseovarius nubinhibens ISM Site: position = -81 score = 9.37491 sequence = CTGGCTCTAT-(13)-CTGGCCCTAT Gene: ISM_10690: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Roseovarius sp. 217 Site: position = -114 score = 9.11122 sequence = CTGGTATTAT-(13)-CTGGCCCTAG Gene: ROS217_11936: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Silicibacter TM1040 Site: position = -115 score = 8.87214 sequence = CTGGCACTAC-(12)-CTGGCCCTAA Gene: TM1040_0155: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Silicibacter pomeroyi DSS-3 Site: position = -106 score = 9.62321 sequence = CTGGACCTAT-(13)-CTGGCCCTAA Gene: SPO3561: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
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Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) |
| tauZ |
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Gene: Pden_1641: Probable sulfate exporter tauZ |
Gene: RSP_4010: Probable sulfate exporter tauZ |
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Gene: MED193_12223: Probable sulfate exporter tauZ |
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Gene: TM1040_0153: Probable sulfate exporter tauZ |
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Probable sulfate exporter tauZ |
| pta |
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Gene: Jann_2847: Phosphate acetyltransferase (EC 2.3.1.8) |
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Gene: Pden_1640: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: RSP_4009: Phosphate acetyltransferase (EC 2.3.1.8) |
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Gene: ISM_10695: Phosphate acetyltransferase (EC 2.3.1.8) |
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Gene: SPO3560: Phosphate acetyltransferase (EC 2.3.1.8) |
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Phosphate acetyltransferase (EC 2.3.1.8) |
| tauE |
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Gene: SKA53_00599: Sulfite exporter |
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Gene: MED193_12213: Sulfite exporter |
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Gene: TM1040_0154: Sulfite exporter |
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Sulfite exporter |
| ackA |
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Gene: MED193_12218: Acetate kinase (EC 2.7.2.1) |
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Gene: ROS217_11931: Acetate kinase (EC 2.7.2.1) |
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Acetate kinase (EC 2.7.2.1) |
| bisC |
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Jannaschia sp. CCS1 Site: position = -120 score = 8.8219 sequence = TTGGTCTCAA-(13)-CTGGCCCTAT Site: position = -97 score = 7.9742 sequence = CTGGCCCTAT-(12)-TTGGCCATAG Gene: Jann_1443: molybdopterin oxidoreductase Fe4S4 protein |
Gene: SKA53_00589: molybdopterin oxidoreductase Fe4S4 protein |
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Gene: MED193_12228: molybdopterin oxidoreductase Fe4S4 protein |
Gene: ISM_10700: molybdopterin oxidoreductase Fe4S4 protein |
Gene: ROS217_11926: molybdopterin oxidoreductase Fe4S4 protein |
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Gene: SPO3559: molybdopterin oxidoreductase Fe4S4 protein |
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molybdopterin oxidoreductase Fe4S4 protein |
| hybA |
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Gene: Jann_1442: 4Fe-4S ferredoxin, iron-sulfur binding |
Gene: SKA53_00579: 4Fe-4S ferredoxin, iron-sulfur binding |
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Gene: MED193_12233: 4Fe-4S ferredoxin, iron-sulfur binding |
Gene: ISM_10705: 4Fe-4S ferredoxin, iron-sulfur binding |
Gene: ROS217_11916: 4Fe-4S ferredoxin, iron-sulfur binding |
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Gene: SPO3558: 4Fe-4S ferredoxin, iron-sulfur binding |
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4Fe-4S ferredoxin, iron-sulfur binding |
| dmsC |
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Gene: Jann_1441: DMSO reductase anchor subunit (DmsC) |
Gene: SKA53_00574: DMSO reductase anchor subunit (DmsC) |
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Gene: MED193_12238: DMSO reductase anchor subunit (DmsC) |
Gene: ISM_10710: DMSO reductase anchor subunit (DmsC) |
Gene: ROS217_11911: DMSO reductase anchor subunit (DmsC) |
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Gene: SPO3557: DMSO reductase anchor subunit (DmsC) |
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DMSO reductase anchor subunit (DmsC) |
| tauR |
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Loktanella vestfoldensis SKA53 Site: position = -69 score = 6.39238 sequence = CTGGGCTAAA-(13)-TTGGCCCCAG Site: position = -46 score = 6.54161 sequence = TTGGCCCCAG-(12)-CTGGACGAAA Gene: SKA53_00604: Taurine utilization regulator, GntR family |
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Gene: Pden_4274: Taurine utilization regulator, GntR family |
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Gene: MED193_12203: Taurine utilization regulator, GntR family |
Gene: ISM_10755: Taurine utilization regulator, GntR family |
Gene: ROS217_11941: Taurine utilization regulator, GntR family |
Gene: TM1040_0156: Taurine utilization regulator, GntR family |
Gene: SPO3562: Taurine utilization regulator, GntR family |
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Taurine utilization regulator, GntR family |
| ackA |
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Gene: SKA53_00594: Acetate kinase (EC 2.7.2.1) |
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Acetate kinase (EC 2.7.2.1) |
| SKA53_00584 |
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Gene: SKA53_00584: hypothetical protein |
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hypothetical protein |
| ROS217_11921 |
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Gene: ROS217_11921: hypothetical protein |
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hypothetical protein |
| COG2128 |
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Gene: TM1040_0152: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
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4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
| tpa2 |
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Paracoccus denitrificans PD1222 Site: position = -93 score = 8.51338 sequence = CTGGCTCCAT-(13)-CTGGCTCTAT Gene: Pden_4273: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
Gene: RSP_0943: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
Gene: RB2654_07134: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
| CRON 2. | ||||||||||||||||
| tpa |
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Gene: SKA53_00609: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Gene: OB2597_14466: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Gene: RB2654_21528: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Roseobacter sp. MED193 Site: position = -130 score = 8.53456 sequence = CTGGATGCAA-(13)-CTGGCCCTAG Gene: MED193_12173: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Roseovarius nubinhibens ISM Site: position = -113 score = 9.06613 sequence = CTGGTGTTAT-(13)-CTGGCCCTAT Gene: ISM_09816: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
*2
Roseovarius sp. 217 Gene: ROS217_11291: Taurine--pyruvate aminotransferase (EC 2.6.1.77) Site: position = -134 score = 9.62321 sequence = CTGGACCTAT-(13)-CTGGCCCTAA Gene: ROS217_11286: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Silicibacter TM1040 Site: position = -128 score = 8.9831 sequence = TTGGACCTAA-(13)-CTGGACCTAT Gene: TM1040_0159: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
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Silicibacter pomeroyi DSS-3 Site: position = -130 score = 8.94514 sequence = TTGGACATAT-(13)-CTGGCCCTAT Gene: SPO0673: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
Gene: EE36_08448: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
| CRON 3. | ||||||||||||||||
| COG161(BioA) |
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Jannaschia sp. CCS1 Site: position = -106 score = 8.84042 sequence = CTGGCCTTAC-(12)-CTGGCCCTAC Gene: Jann_2848: aminotransferase class-III |
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aminotransferase class-III |
| dadA (tauD?) |
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Gene: Jann_2849: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
Gene: SKA53_10159: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
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Gene: Pden_4916: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
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Gene: RB2654_07129: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
Gene: MED193_14797: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
Gene: ISM_09150: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
Gene: ROS217_13551: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
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Gene: SPO3396: FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
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FAD dependent oxidoreductase/Sarcosine dehydrogenase (EC 1.5.99.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |