Regulog GabR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | repressor (activator) |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Pyridoxal-5-phosphate; Gamma-aminobutyric acid |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | ||
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | 3 | 1 |
| Bacillus pumilus SAFR-032 | 3 | 1 |
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| gabT |
Gene: Aflv_1242: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -182 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: RBAM_004150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gene: BC0355: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
Gene: BH0991: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bacillus licheniformis DSM 13 Site: position = -87 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BLi00474: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bacillus pumilus SAFR-032 Site: position = -86 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BPUM_0362: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -86 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BSU03900: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
|
|
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabP |
Gene: Aflv_1244: Gamma-aminobutyrate permease |
|
|
|
Gene: BH0994: Gamma-aminobutyrate permease |
Gene: BLi00475: Gamma-aminobutyrate permease |
Gene: BPUM_0363: Gamma-aminobutyrate permease |
|
|
Gene: OB0489: Gamma-aminobutyrate permease |
|
Gamma-aminobutyrate permease |
| gabD |
|
Gene: RBAM_004160: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
|
Gene: BH3316: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: BLi00476: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: BPUM_0364: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: BSU03910: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
|
|
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |