Regulog GabR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:	repressor (activator)
Biological process:	Gamma-aminobutyrate utilization
Effector:	Pyridoxal-5-phosphate; Gamma-aminobutyric acid
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	2	1
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13	3	1
Bacillus pumilus SAFR-032	3	1
Bacillus subtilis subsp. subtilis str. 168	2	1
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
gabT	Anoxybacillus flavithermus WK1 Gene: Aflv_1242: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bacillus amyloliquefaciens FZB42 Site: position = -182 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: RBAM_004150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Bacillus cereus ATCC 14579 Gene: BC0355: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH0991: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bacillus licheniformis DSM 13 Site: position = -87 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BLi00474: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bacillus pumilus SAFR-032 Site: position = -86 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BPUM_0362: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -86 score = 12.5278 sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA Gene: BSU03900: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabP	Anoxybacillus flavithermus WK1 Gene: Aflv_1244: Gamma-aminobutyrate permease	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH0994: Gamma-aminobutyrate permease	Bacillus licheniformis DSM 13 Gene: BLi00475: Gamma-aminobutyrate permease	Bacillus pumilus SAFR-032 Gene: BPUM_0363: Gamma-aminobutyrate permease	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB0489: Gamma-aminobutyrate permease	Paenibacillus sp. JDR-2	Gamma-aminobutyrate permease
gabD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_004160: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3316: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bacillus licheniformis DSM 13 Gene: BLi00476: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bacillus pumilus SAFR-032 Gene: BPUM_0364: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03910: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --