Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YhdI/YdeL - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13 1 1
Bacillus subtilis subsp. subtilis str. 168 2 2
Bacillus amyloliquefaciens FZB42 1 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 2 2
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ydeK
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -136
score = 10.3202
sequence = ACTGGTAT-(16)-ACTGGCTG-(8)-AGGCCAAT

Gene: BSU05230: Permease of the drug/metabolite transporter (DMT) superfamily
*
Bacillus amyloliquefaciens FZB42

Site:
position = -111
score = 10.941
sequence = ACTGGCAT-(16)-ACTGGCCA-(8)-AGGCCAAT

Gene: RBAM_005850: Permease of the drug/metabolite transporter (DMT) superfamily
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -116
score = 10.0839
sequence = TCTGACCC-(16)-TCTGATAC-(8)-GTACCAGA

Gene: BC0582: Permease of the drug/metabolite transporter (DMT) superfamily
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 2.
yhdJ
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -88
score = 10.2576
sequence = TCTGGTAT-(16)-ACTGGTCA-(8)-AGCCCAGT

Gene: BLi01017: Acetyltransferase (EC 2.3.1.-)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -92
score = 9.72871
sequence = GCTGGCAT-(16)-ATTGGCTA-(8)-ATGCCATT

Gene: BSU09490: Acetyltransferase (EC 2.3.1.-)
 
Bacillus amyloliquefaciens FZB42
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1498: Acetyltransferase (EC 2.3.1.-)
*
Bacillus cereus ATCC 14579

Site:
position = -111
score = 10.9474
sequence = ACTGGCCT-(16)-ACTGCCAC-(8)-AGGGCAGT

Gene: BC2069: Acetyltransferase (EC 2.3.1.-)
 
Bacillus clausii KSM-K16

Gene: ABC0852: Acetyltransferase (EC 2.3.1.-)
 
Bacillus halodurans C-125

Gene: BH1582: Acetyltransferase (EC 2.3.1.-)
 
Oceanobacillus iheyensis HTE831

Gene: OB0311: Acetyltransferase (EC 2.3.1.-)
 
Paenibacillus sp. JDR-2
Acetyltransferase (EC 2.3.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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