Regulog YrdX3 - Xanthomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 1 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Stenotrophomonas maltophilia K279a	5	1
Xanthomonas axonopodis pv. citri str. 306
Xanthomonas campestris pv. campestris str. ATCC 33913
Xylella fastidiosa 9a5c

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
cyoA	* Stenotrophomonas maltophilia K279a Site: position = -170 score = 13.4441 sequence = CCATACGT-(14)-CCATACAA-(9)-TTGTATGG Gene: Smlt4401: putative cytochrome O ubiquinol oxidase subunit II	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Xylella fastidiosa 9a5c	putative cytochrome O ubiquinol oxidase subunit II
cyoB	Stenotrophomonas maltophilia K279a Gene: Smlt4400: putative ubiquinol oxidase polypeptide I	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Xylella fastidiosa 9a5c	putative ubiquinol oxidase polypeptide I
cyoC	Stenotrophomonas maltophilia K279a Gene: Smlt4399: putative cytochrome o ubiquinol oxidase subunit III	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Xylella fastidiosa 9a5c	putative cytochrome o ubiquinol oxidase subunit III
cyoD	Stenotrophomonas maltophilia K279a Gene: Smlt4398: putative cytochrome O ubiquinol oxidase subunit IV	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Xylella fastidiosa 9a5c	putative cytochrome O ubiquinol oxidase subunit IV
COG1999	Stenotrophomonas maltophilia K279a Gene: Smlt4397: putative SCO1/SenC family protein	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Xylella fastidiosa 9a5c	putative SCO1/SenC family protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --