Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YrdX3 - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Stenotrophomonas maltophilia K279a 5 1
Xanthomonas axonopodis pv. citri str. 306
Xanthomonas campestris pv. campestris str. ATCC 33913
Xylella fastidiosa 9a5c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cyoA
*
Stenotrophomonas maltophilia K279a

Site:
position = -170
score = 13.4441
sequence = CCATACGT-(14)-CCATACAA-(9)-TTGTATGG

Gene: Smlt4401: putative cytochrome O ubiquinol oxidase subunit II
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
putative cytochrome O ubiquinol oxidase subunit II
cyoB
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4400: putative ubiquinol oxidase polypeptide I
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
putative ubiquinol oxidase polypeptide I
cyoC
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4399: putative cytochrome o ubiquinol oxidase subunit III
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
putative cytochrome o ubiquinol oxidase subunit III
cyoD
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4398: putative cytochrome O ubiquinol oxidase subunit IV
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
putative cytochrome O ubiquinol oxidase subunit IV
COG1999
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4397: putative SCO1/SenC family protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
putative SCO1/SenC family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD