Regulog YrdX3 - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16	6	1
Ralstonia eutropha JMP134	5	2
Ralstonia metallidurans CH34	5	2
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
yrdX3	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1644: Transcriptional regulator, GntR/MocR family	* Ralstonia eutropha JMP134 Site: position = -100 score = 9.18345 sequence = TTTGTATGGAT-(18)-ATGGTAAGGTA-(36)-ATCCACCTACA Gene: Reut_B4580: Transcriptional regulator, GntR/MocR family	* Ralstonia metallidurans CH34 Site: position = -100 score = 11.6549 sequence = ATTGATGGGGG-(19)-TTTGTATGGAT-(36)-ATCCATACAAG Gene: Rmet_5794: Transcriptional regulator, GntR/MocR family	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RS03409: Transcriptional regulator, GntR/MocR family	Transcriptional regulator, GntR/MocR family

CRON 2.
cyoA2	Cupriavidus taiwanensis	* Ralstonia eutropha H16 Site: position = -174 score = 14.6904 sequence = CTTGCATGGAT-(20)-GATGTATGGGT-(37)-ATCCATACAAA Gene: H16_A1643: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	* Ralstonia eutropha JMP134 Site: position = -101 score = 14.9524 sequence = CTTGTAGGTGG-(20)-CTTGTATGGAT-(36)-ATCCATACAAA Gene: Reut_B4579: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	* Ralstonia metallidurans CH34 Site: position = -122 score = 15.1282 sequence = TTTGTACGCAC-(12)-CTTGTATGGAT-(36)-ATCCATACAAA Gene: Rmet_5793: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Ralstonia pickettii 12J	* Ralstonia solanacearum GMI1000 Site: position = -192 score = 14.8069 sequence = GTTGTATGGTC-(21)-CTTGTATGGGT-(37)-ATCCATACATC Gene: RSc1858: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
cyoB2	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1642: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Ralstonia eutropha JMP134 Gene: Reut_B4578: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_5792: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RSc1859: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
cyoC2	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1641: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Ralstonia eutropha JMP134 Gene: Reut_B4577: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_5791: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RSc1860: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
cyoD2	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1640: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Ralstonia eutropha JMP134 Gene: Reut_B4576: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_5790: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RSc1861: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
cysI2	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1639: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Ralstonia eutropha JMP134 Gene: Reut_B3940: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RSc1862: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
h16_A1638	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1638: Oxidoreductase probably involved in sulfite reduction	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RS03423: Oxidoreductase probably involved in sulfite reduction	Oxidoreductase probably involved in sulfite reduction

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX3 - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --