Regulog YrdX3 - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | ||
| Ralstonia eutropha H16 | 6 | 1 |
| Ralstonia eutropha JMP134 | 5 | 2 |
| Ralstonia metallidurans CH34 | 5 | 2 |
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 | 6 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| yrdX3 |
|
Gene: H16_A1644: Transcriptional regulator, GntR/MocR family |
*
Ralstonia eutropha JMP134 Site: position = -100 score = 9.18345 sequence = TTTGTATGGAT-(18)-ATGGTAAGGTA-(36)-ATCCACCTACA Gene: Reut_B4580: Transcriptional regulator, GntR/MocR family |
*
Ralstonia metallidurans CH34 Site: position = -100 score = 11.6549 sequence = ATTGATGGGGG-(19)-TTTGTATGGAT-(36)-ATCCATACAAG Gene: Rmet_5794: Transcriptional regulator, GntR/MocR family |
|
Gene: RS03409: Transcriptional regulator, GntR/MocR family |
Transcriptional regulator, GntR/MocR family |
| CRON 2. | |||||||
| cyoA2 |
|
*
Ralstonia eutropha H16 Site: position = -174 score = 14.6904 sequence = CTTGCATGGAT-(20)-GATGTATGGGT-(37)-ATCCATACAAA Gene: H16_A1643: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) |
*
Ralstonia eutropha JMP134 Site: position = -101 score = 14.9524 sequence = CTTGTAGGTGG-(20)-CTTGTATGGAT-(36)-ATCCATACAAA Gene: Reut_B4579: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) |
*
Ralstonia metallidurans CH34 Site: position = -122 score = 15.1282 sequence = TTTGTACGCAC-(12)-CTTGTATGGAT-(36)-ATCCATACAAA Gene: Rmet_5793: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) |
|
*
Ralstonia solanacearum GMI1000 Site: position = -192 score = 14.8069 sequence = GTTGTATGGTC-(21)-CTTGTATGGGT-(37)-ATCCATACATC Gene: RSc1858: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) |
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) |
| cyoB2 |
|
Gene: H16_A1642: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: Reut_B4578: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: Rmet_5792: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) |
|
Gene: RSc1859: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) |
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) |
| cyoC2 |
|
Gene: H16_A1641: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) |
Gene: Reut_B4577: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) |
Gene: Rmet_5791: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) |
|
Gene: RSc1860: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) |
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) |
| cyoD2 |
|
Gene: H16_A1640: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) |
Gene: Reut_B4576: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) |
Gene: Rmet_5790: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) |
|
Gene: RSc1861: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) |
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) |
| cysI2 |
|
Gene: H16_A1639: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: Reut_B3940: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
|
|
Gene: RSc1862: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
| h16_A1638 |
|
Gene: H16_A1638: Oxidoreductase probably involved in sulfite reduction |
|
|
|
Gene: RS03423: Oxidoreductase probably involved in sulfite reduction |
Oxidoreductase probably involved in sulfite reduction |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |