Regulog YjiR2 - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043
Hahella chejuensis KCTC 2396	1	1
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Marinobacter aqueolei	1	1
Marinobacter sp. ELB17	1	1
Saccharophagus degradans 2-40	2	1
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
PF01810	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	* Cellvibrio japonicus Ueda107 Site: position = -142 score = 16.7837 sequence = TACAGAT-(17)-TACAGTT-(13)-ATCTGTA-(23)-ATCTGTA Gene: CJA_1193: transporter, LysE family	Transporter, LysE family

CRON 2.
PF02567	Alcanivorax borkumensis SK2 Gene: ABO_1724: Phenazine biosynthesis PhzC/PhzF protein	Chromohalobacter salexigens DSM 3043	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	* Marinobacter aqueolei Site: position = -440 score = 16.1323 sequence = TACAGAT-(18)-CACAGTT-(13)-ATCTGTA-(24)-ATCTGTT Gene: Maqu_2098: Phenazine biosynthesis PhzC/PhzF protein	* Marinobacter sp. ELB17 Site: position = -416 score = 13.6711 sequence = CACAGAT-(18)-TACAGAA-(13)-ATCTGTA-(24)-TTCTGTT Gene: MELB17_07954: Phenazine biosynthesis PhzC/PhzF protein	* Saccharophagus degradans 2-40 Site: position = -228 score = 16.3792 sequence = AACAGTT-(18)-TACAGTT-(12)-AACTGTA-(24)-AACTGTA Gene: Sde_3058: Phenazine biosynthesis PhzC/PhzF protein	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Phenazine biosynthesis PhzC/PhzF protein
PF01063	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043	* Hahella chejuensis KCTC 2396 Site: position = -148 score = 15.3917 sequence = CACAGTT-(17)-TACAGTG-(13)-AACTGTA-(23)-GCCTATA Gene: HCH_06836: Aminotransferase, class IV	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40 Gene: Sde_3057: Aminotransferase, class IV	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Aminotransferase, class IV

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YjiR2 - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --