Regulog YjiR2 - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Alcanivorax borkumensis SK2 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Hahella chejuensis KCTC 2396 | 1 | 1 |
| Marinomonas sp. MWYL1 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Reinekea sp. MED297 | ||
| Marinobacter aqueolei | 1 | 1 |
| Marinobacter sp. ELB17 | 1 | 1 |
| Saccharophagus degradans 2-40 | 2 | 1 |
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | 1 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| PF01810 |
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Cellvibrio japonicus Ueda107 Site: position = -142 score = 16.7837 sequence = TACAGAT-(17)-TACAGTT-(13)-ATCTGTA-(23)-ATCTGTA Gene: CJA_1193: transporter, LysE family |
Transporter, LysE family |
| CRON 2. | |||||||||||||
| PF02567 |
Gene: ABO_1724: Phenazine biosynthesis PhzC/PhzF protein |
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Marinobacter aqueolei Site: position = -440 score = 16.1323 sequence = TACAGAT-(18)-CACAGTT-(13)-ATCTGTA-(24)-ATCTGTT Gene: Maqu_2098: Phenazine biosynthesis PhzC/PhzF protein |
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Marinobacter sp. ELB17 Site: position = -416 score = 13.6711 sequence = CACAGAT-(18)-TACAGAA-(13)-ATCTGTA-(24)-TTCTGTT Gene: MELB17_07954: Phenazine biosynthesis PhzC/PhzF protein |
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Saccharophagus degradans 2-40 Site: position = -228 score = 16.3792 sequence = AACAGTT-(18)-TACAGTT-(12)-AACTGTA-(24)-AACTGTA Gene: Sde_3058: Phenazine biosynthesis PhzC/PhzF protein |
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Phenazine biosynthesis PhzC/PhzF protein |
| PF01063 |
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Hahella chejuensis KCTC 2396 Site: position = -148 score = 15.3917 sequence = CACAGTT-(17)-TACAGTG-(13)-AACTGTA-(23)-GCCTATA Gene: HCH_06836: Aminotransferase, class IV |
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Gene: Sde_3057: Aminotransferase, class IV |
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Aminotransferase, class IV |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |