Regulog YjiR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Reinekea sp. MED297	2	1
Oceanospirillum sp. MED92	1	1
Oceanobacter sp. RED65
Marinomonas sp. MWYL1	1	1
Hahella chejuensis KCTC 2396	2	1
Chromohalobacter salexigens DSM 3043
Alcanivorax borkumensis SK2
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Marinobacter sp. ELB17
Marinobacter aqueolei
Cellvibrio japonicus Ueda107

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
yjiS	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	* Hahella chejuensis KCTC 2396 Site: position = -193 score = 16.2324 sequence = TACAGAT-(18)-AACAGAA-(13)-ATCTGTT-(24)-ATCTGTA Gene: HCH_00191: hypothetical protein	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter sp. ELB17	Marinobacter aqueolei	Cellvibrio japonicus Ueda107	hypothetical protein
PF01810	Reinekea sp. MED297 Gene: MED297_00525: Transporter, LysE family	Oceanospirillum sp. MED92 Gene: MED92_03622: Transporter, LysE family	Oceanobacter sp. RED65	* Marinomonas sp. MWYL1 Site: position = -381 score = 16.088 sequence = TACAGAT-(17)-TACAGTG-(13)-CACTGTA-(23)-ATCTGTA Gene: Mmwyl1_1451: Transporter, LysE family	Hahella chejuensis KCTC 2396 Gene: HCH_00192: Transporter, LysE family	Chromohalobacter salexigens DSM 3043 Gene: Csal_1102: Transporter, LysE family	Alcanivorax borkumensis SK2	Teredinibacter turnerae T7901 Gene: TERTU_0160: Transporter, LysE family	Saccharophagus degradans 2-40	2 Marinobacter sp. ELB17 Gene: MELB17_00755: Transporter, LysE family Gene: MELB17_00745: Transporter, LysE family	Marinobacter aqueolei	Cellvibrio japonicus Ueda107	Transporter, LysE family
MED297_00530	* Reinekea sp. MED297 Site: position = -142 score = 16.4602 sequence = TACAGTT-(28)-TACAGAT-(2)-ATCTGTA-(24)-ATCTGTA Gene: MED297_00530: hypothetical protein	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter sp. ELB17	Marinobacter aqueolei	Cellvibrio japonicus Ueda107	hypothetical protein

CRON 2.
MED92_02808	Reinekea sp. MED297	* Oceanospirillum sp. MED92 Site: position = -177 score = 16.3436 sequence = TACAGAT-(17)-CACAGTC-(13)-ATCTGTA-(24)-ATCTGTA Site: position = -182 score = 14.171 sequence = AACAGTA-(22)-CACAGTC-(13)-ATCTGTA-(24)-ATCTGTA Gene: MED92_02808: hypothetical protein	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter sp. ELB17	Marinobacter aqueolei	Cellvibrio japonicus Ueda107	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YjiR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --