Regulog YjiR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Reinekea sp. MED297 | 2 | 1 |
| Oceanospirillum sp. MED92 | 1 | 1 |
| Oceanobacter sp. RED65 | ||
| Marinomonas sp. MWYL1 | 1 | 1 |
| Hahella chejuensis KCTC 2396 | 2 | 1 |
| Chromohalobacter salexigens DSM 3043 | ||
| Alcanivorax borkumensis SK2 | ||
| Teredinibacter turnerae T7901 | ||
| Saccharophagus degradans 2-40 | ||
| Marinobacter sp. ELB17 | ||
| Marinobacter aqueolei | ||
| Cellvibrio japonicus Ueda107 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| yjiS |
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Hahella chejuensis KCTC 2396 Site: position = -193 score = 16.2324 sequence = TACAGAT-(18)-AACAGAA-(13)-ATCTGTT-(24)-ATCTGTA Gene: HCH_00191: hypothetical protein |
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hypothetical protein |
| PF01810 |
Gene: MED297_00525: Transporter, LysE family |
Gene: MED92_03622: Transporter, LysE family |
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Marinomonas sp. MWYL1 Site: position = -381 score = 16.088 sequence = TACAGAT-(17)-TACAGTG-(13)-CACTGTA-(23)-ATCTGTA Gene: Mmwyl1_1451: Transporter, LysE family |
Gene: HCH_00192: Transporter, LysE family |
Gene: Csal_1102: Transporter, LysE family |
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Gene: TERTU_0160: Transporter, LysE family |
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2
Marinobacter sp. ELB17 Gene: MELB17_00755: Transporter, LysE family Gene: MELB17_00745: Transporter, LysE family |
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Transporter, LysE family |
| MED297_00530 |
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Reinekea sp. MED297 Site: position = -142 score = 16.4602 sequence = TACAGTT-(28)-TACAGAT-(2)-ATCTGTA-(24)-ATCTGTA Gene: MED297_00530: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||||
| MED92_02808 |
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Oceanospirillum sp. MED92 Site: position = -177 score = 16.3436 sequence = TACAGAT-(17)-CACAGTC-(13)-ATCTGTA-(24)-ATCTGTA Site: position = -182 score = 14.171 sequence = AACAGTA-(22)-CACAGTC-(13)-ATCTGTA-(24)-ATCTGTA Gene: MED92_02808: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |