Regulog YjiR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 1 | 1 |
| Pseudomonas entomophila L48 | 1 | 1 |
| Pseudomonas fluorescens Pf-5 | 1 | 1 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas putida KT2440 | 1 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| yjiS |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -144 score = 16.2058 sequence = TACAGAT-(17)-TTCAGGC-(13)-ATCTGTA-(23)-ACCTGTA Gene: PA2031: putative cytoplasmic protein of unknown function DUF1127 |
*
Pseudomonas entomophila L48 Site: position = -143 score = 16.0478 sequence = TACAGAT-(17)-TTCAGCC-(13)-TTCTGTA-(23)-GTCTGTA Gene: PSEEN5420: putative cytoplasmic protein of unknown function DUF1127 |
*
Pseudomonas fluorescens Pf-5 Site: position = -146 score = 15.1477 sequence = TACAGAT-(17)-TTCAGCA-(13)-AACTGTA-(23)-GTCTGTA Gene: PFL_6042: putative cytoplasmic protein of unknown function DUF1127 |
*
Pseudomonas mendocina ymp Site: position = -139 score = 16.0127 sequence = TACAGAT-(17)-TTCAGAT-(13)-ATCTGTA-(23)-ATCTGTC Gene: Pmen_0241: putative cytoplasmic protein of unknown function DUF1127 |
*
Pseudomonas putida KT2440 Site: position = -50 score = 16.3023 sequence = TACAGTT-(17)-TTCAGTC-(13)-TTCTGTA-(23)-ATCTGTA Gene: PP5274: putative cytoplasmic protein of unknown function DUF1127 |
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -86 score = 16.2012 sequence = TACAGAT-(17)-TTCAGCA-(13)-TTCTGTA-(23)-ATCTGTA Gene: PSPTO0097: putative cytoplasmic protein of unknown function DUF1127 |
putative cytoplasmic protein of unknown function DUF1127 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |