Regulog YjiR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1	1	1
Pseudomonas entomophila L48	1	1
Pseudomonas fluorescens Pf-5	1	1
Pseudomonas mendocina ymp	1	1
Pseudomonas putida KT2440	1	1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
yjiS	Azotobacter vinelandii AvOP	* Pseudomonas aeruginosa PAO1 Site: position = -144 score = 16.2058 sequence = TACAGAT-(17)-TTCAGGC-(13)-ATCTGTA-(23)-ACCTGTA Gene: PA2031: putative cytoplasmic protein of unknown function DUF1127	* Pseudomonas entomophila L48 Site: position = -143 score = 16.0478 sequence = TACAGAT-(17)-TTCAGCC-(13)-TTCTGTA-(23)-GTCTGTA Gene: PSEEN5420: putative cytoplasmic protein of unknown function DUF1127	* Pseudomonas fluorescens Pf-5 Site: position = -146 score = 15.1477 sequence = TACAGAT-(17)-TTCAGCA-(13)-AACTGTA-(23)-GTCTGTA Gene: PFL_6042: putative cytoplasmic protein of unknown function DUF1127	* Pseudomonas mendocina ymp Site: position = -139 score = 16.0127 sequence = TACAGAT-(17)-TTCAGAT-(13)-ATCTGTA-(23)-ATCTGTC Gene: Pmen_0241: putative cytoplasmic protein of unknown function DUF1127	* Pseudomonas putida KT2440 Site: position = -50 score = 16.3023 sequence = TACAGTT-(17)-TTCAGTC-(13)-TTCTGTA-(23)-ATCTGTA Gene: PP5274: putative cytoplasmic protein of unknown function DUF1127	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -86 score = 16.2012 sequence = TACAGAT-(17)-TTCAGCA-(13)-TTCTGTA-(23)-ATCTGTA Gene: PSPTO0097: putative cytoplasmic protein of unknown function DUF1127	putative cytoplasmic protein of unknown function DUF1127

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --