Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YjiR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1 1 1
Pseudomonas entomophila L48 1 1
Pseudomonas fluorescens Pf-5 1 1
Pseudomonas mendocina ymp 1 1
Pseudomonas putida KT2440 1 1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yjiS
 
Azotobacter vinelandii AvOP
*
Pseudomonas aeruginosa PAO1

Site:
position = -144
score = 16.2058
sequence = TACAGAT-(17)-TTCAGGC-(13)-ATCTGTA-(23)-ACCTGTA

Gene: PA2031: putative cytoplasmic protein of unknown function DUF1127
*
Pseudomonas entomophila L48

Site:
position = -143
score = 16.0478
sequence = TACAGAT-(17)-TTCAGCC-(13)-TTCTGTA-(23)-GTCTGTA

Gene: PSEEN5420: putative cytoplasmic protein of unknown function DUF1127
*
Pseudomonas fluorescens Pf-5

Site:
position = -146
score = 15.1477
sequence = TACAGAT-(17)-TTCAGCA-(13)-AACTGTA-(23)-GTCTGTA

Gene: PFL_6042: putative cytoplasmic protein of unknown function DUF1127
*
Pseudomonas mendocina ymp

Site:
position = -139
score = 16.0127
sequence = TACAGAT-(17)-TTCAGAT-(13)-ATCTGTA-(23)-ATCTGTC

Gene: Pmen_0241: putative cytoplasmic protein of unknown function DUF1127
*
Pseudomonas putida KT2440

Site:
position = -50
score = 16.3023
sequence = TACAGTT-(17)-TTCAGTC-(13)-TTCTGTA-(23)-ATCTGTA

Gene: PP5274: putative cytoplasmic protein of unknown function DUF1127
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -86
score = 16.2012
sequence = TACAGAT-(17)-TTCAGCA-(13)-TTCTGTA-(23)-ATCTGTA

Gene: PSPTO0097: putative cytoplasmic protein of unknown function DUF1127
putative cytoplasmic protein of unknown function DUF1127
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD