Regulog Veis_0044 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | 8 | 3 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| Veis_0044 |
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Verminephrobacter eiseniae EF01-2 Site: position = -26 score = 10.4487 sequence = AATTGGCCCC-(14)-TAATGGACAT-(6)-GGGGCCAGAT Gene: Veis_0044: Transcriptional regulator, GntR family domain |
Transcriptional regulator, GntR family domain |
| CRON 2. | ||||||||||||
| rbsB |
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Verminephrobacter eiseniae EF01-2 Site: position = -153 score = 12.6428 sequence = ATCTGGCCCC-(14)-TACTGGACCT-(6)-GGGGCCAATT Gene: Veis_0045: Sugar ABC transporter, periplasmic sugar-binding protein |
Sugar ABC transporter, periplasmic sugar-binding protein |
| araH |
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Gene: Veis_0046: Permease protein of sugar ABC transporter |
Permease protein of sugar ABC transporter |
| Veis_0047 |
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Gene: Veis_0047: Sugar ABC transporter, ATP-binding protein |
Sugar ABC transporter, ATP-binding protein |
| COG2120 |
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Gene: Veis_0048: LmbE family protein |
LmbE family protein |
| iolE |
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Gene: Veis_0049: Inosose isomerase (EC 5.3.99.-) |
Inosose isomerase (EC 5.3.99.-) |
| mviM |
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Gene: Veis_0050: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| CRON 3. | ||||||||||||
| iolE |
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Verminephrobacter eiseniae EF01-2 Site: position = -158 score = 13.5259 sequence = AACTGGCTCC-(14)-TTCTGGAGCT-(6)-AGAACCAAGG Gene: Veis_0043: Inosose dehydratase (EC 4.2.1.44) |
Inosose dehydratase (EC 4.2.1.44) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |