Regulog PdxQ - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/MocR
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	2	2
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426	3	1
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
pdxO2	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -104 score = 12.5169 sequence = CTGACAT-(16)-CTGTACC-(7)-ATGTCAG Gene: RBAM_005780: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	* Geobacillus kaustophilus HTA426 Site: position = -109 score = 12.0681 sequence = CTGACAT-(16)-TTGTCAC-(7)-ATGTCAG Gene: GK0739: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
rhtB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK0740: Threonine efflux protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Threonine efflux protein
GOG3382	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK0741: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta

CRON 2.
dapA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -101 score = 11.6323 sequence = CTGACAT-(16)-CTGTACC-(7)-ATGTCAT Gene: RBAM_005640: Dihydrodipicolinate synthase (EC 4.2.1.52)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3582: Dihydrodipicolinate synthase (EC 4.2.1.52)	Dihydrodipicolinate synthase (EC 4.2.1.52)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --