Regulog PdxQ - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:	Pyridoxal-5-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052	1	1
Clostridium botulinum A str. ATCC 3502	3	1
Clostridium butyricum 5521
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
CBO0636	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	* Clostridium botulinum A str. ATCC 3502 Site: position = -176 score = 8.18475 sequence = CTGTAT-(18)-CCGTCT-(10)-GGACGG Gene: CBO0636: Predicted membrane protein	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Predicted membrane protein
CBO0634	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502 Gene: CBO0634: probable membrane protein	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	probable membrane protein
pdxO	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -149 score = 9.9541 sequence = CTGTAT-(18)-TTGGCA-(10)-GTACAC Gene: Cbei_2206: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Clostridium botulinum A str. ATCC 3502 Gene: CBO0633: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --