Regulog SPOA0379 - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | 7 | 2 |
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | 6 | 2 |
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| COG4948 |
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Gene: SKA53_10339: Muconolactone isomerase (EC 5.3.3.4) |
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Gene: MED193_08208: Muconolactone isomerase (EC 5.3.3.4) |
Gene: ISM_12500: Muconolactone isomerase (EC 5.3.3.4) |
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Roseovarius sp. 217 Site: position = -87 score = 13.3227 sequence = AAATGGACTG-(13)-GAGTGGAGCT-(5)-CGAACCGCTT Gene: ROS217_07300: Muconolactone isomerase (EC 5.3.3.4) |
Gene: TM1040_0846: Muconolactone isomerase (EC 5.3.3.4) |
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Silicibacter pomeroyi DSS-3 Site: position = -107 score = 13.3002 sequence = AATTGGTCTG-(12)-AAATGGATAT-(6)-CAGCCCGATT Gene: SPOA0378: Muconolactone isomerase (EC 5.3.3.4) |
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Muconolactone isomerase (EC 5.3.3.4) |
| ROS217_07305 |
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Gene: ROS217_07305: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Gene: SPOA0379: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
| CRON 2. | ||||||||||||||||
| dadA |
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Gene: MED193_01320: putative D-amino acid oxidoreductase |
Gene: ISM_03790: putative D-amino acid oxidoreductase |
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Roseovarius sp. 217 Site: position = -179 score = 11.7841 sequence = AATTGGTCTG-(12)-AATTGGATAT-(6)-AAGTCCAATG Gene: ROS217_07310: putative D-amino acid oxidoreductase |
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Silicibacter pomeroyi DSS-3 Site: position = -125 score = 10.3072 sequence = GATTGGTCTG-(12)-TATTGGATAT-(6)-CAAGCCAATA Gene: SPOA0380: putative D-amino acid oxidoreductase |
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putative D-amino acid oxidoreductase |
| potD |
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Gene: ISM_03795: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein |
Gene: ROS217_07315: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein |
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Gene: SPOA0381: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein |
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spermidine/putrescine ABC transporter, periplasmic substrate-binding protein |
| potA |
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Gene: ISM_03800: spermidine/putrescine ABC transporter, ATP-binding protein |
Gene: ROS217_07320: spermidine/putrescine ABC transporter, ATP-binding protein |
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Gene: SPOA0382: spermidine/putrescine ABC transporter, ATP-binding protein |
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spermidine/putrescine ABC transporter, ATP-binding protein |
| potB |
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Gene: ISM_03805: spermidine/putrescine ABC transporter, permease protein |
Gene: ROS217_07325: spermidine/putrescine ABC transporter, permease protein |
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Gene: SPOA0383: spermidine/putrescine ABC transporter, permease protein |
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spermidine/putrescine ABC transporter, permease protein |
| potC |
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Gene: ISM_03810: spermidine/putrescine ABC transporter, permease protein |
Gene: ROS217_07330: spermidine/putrescine ABC transporter, permease protein |
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Gene: SPOA0384: spermidine/putrescine ABC transporter, permease protein |
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spermidine/putrescine ABC transporter, permease protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |