Regulog SPOA0379 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217	7	2
Silicibacter TM1040
Silicibacter pomeroyi DSS-3	6	2
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
COG4948	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53 Gene: SKA53_10339: Muconolactone isomerase (EC 5.3.3.4)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_08208: Muconolactone isomerase (EC 5.3.3.4)	Roseovarius nubinhibens ISM Gene: ISM_12500: Muconolactone isomerase (EC 5.3.3.4)	* Roseovarius sp. 217 Site: position = -87 score = 13.3227 sequence = AAATGGACTG-(13)-GAGTGGAGCT-(5)-CGAACCGCTT Gene: ROS217_07300: Muconolactone isomerase (EC 5.3.3.4)	Silicibacter TM1040 Gene: TM1040_0846: Muconolactone isomerase (EC 5.3.3.4)	* Silicibacter pomeroyi DSS-3 Site: position = -107 score = 13.3002 sequence = AATTGGTCTG-(12)-AAATGGATAT-(6)-CAGCCCGATT Gene: SPOA0378: Muconolactone isomerase (EC 5.3.3.4)	Sulfitobacter sp. EE-36	Muconolactone isomerase (EC 5.3.3.4)
ROS217_07305	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_07305: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0379: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Sulfitobacter sp. EE-36	Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

CRON 2.
dadA	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_01320: putative D-amino acid oxidoreductase	Roseovarius nubinhibens ISM Gene: ISM_03790: putative D-amino acid oxidoreductase	* Roseovarius sp. 217 Site: position = -179 score = 11.7841 sequence = AATTGGTCTG-(12)-AATTGGATAT-(6)-AAGTCCAATG Gene: ROS217_07310: putative D-amino acid oxidoreductase	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -125 score = 10.3072 sequence = GATTGGTCTG-(12)-TATTGGATAT-(6)-CAAGCCAATA Gene: SPOA0380: putative D-amino acid oxidoreductase	Sulfitobacter sp. EE-36	putative D-amino acid oxidoreductase
potD	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM Gene: ISM_03795: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein	Roseovarius sp. 217 Gene: ROS217_07315: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0381: spermidine/putrescine ABC transporter, periplasmic substrate-binding protein	Sulfitobacter sp. EE-36	spermidine/putrescine ABC transporter, periplasmic substrate-binding protein
potA	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM Gene: ISM_03800: spermidine/putrescine ABC transporter, ATP-binding protein	Roseovarius sp. 217 Gene: ROS217_07320: spermidine/putrescine ABC transporter, ATP-binding protein	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0382: spermidine/putrescine ABC transporter, ATP-binding protein	Sulfitobacter sp. EE-36	spermidine/putrescine ABC transporter, ATP-binding protein
potB	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM Gene: ISM_03805: spermidine/putrescine ABC transporter, permease protein	Roseovarius sp. 217 Gene: ROS217_07325: spermidine/putrescine ABC transporter, permease protein	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0383: spermidine/putrescine ABC transporter, permease protein	Sulfitobacter sp. EE-36	spermidine/putrescine ABC transporter, permease protein
potC	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM Gene: ISM_03810: spermidine/putrescine ABC transporter, permease protein	Roseovarius sp. 217 Gene: ROS217_07330: spermidine/putrescine ABC transporter, permease protein	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0384: spermidine/putrescine ABC transporter, permease protein	Sulfitobacter sp. EE-36	spermidine/putrescine ABC transporter, permease protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SPOA0379 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --