Regulog Sbal_3352 - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Shewanella amazonensis SB2B | ||
| Shewanella baltica OS155 | 2 | 2 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella loihica PV-4 | ||
| Shewanella oneidensis MR-1 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella putrefaciens CN-32 | 2 | 2 |
| Shewanella sediminis HAW-EB3 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella sp W3-18-1 | 2 | 2 |
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| PF00583 |
|
*
Shewanella baltica OS155 Site: position = -110 score = 14.5644 sequence = ACTGGTACTG-(14)-AGTGTACCTT-(3)-TGGTACCGCA Gene: Sbal_3351: GCN5-related N-acetyltransferase (GNAT) domain |
|
|
|
|
|
|
|
*
Shewanella putrefaciens CN-32 Site: position = -111 score = 14.5368 sequence = ACTGGTACTG-(14)-AGTGTACCTT-(3)-CGGTACCACA Gene: Sputcn32_3002: GCN5-related N-acetyltransferase (GNAT) domain |
|
|
|
|
*
Shewanella sp W3-18-1 Site: position = -111 score = 14.5368 sequence = ACTGGTACTG-(14)-AGTGTACCTT-(3)-CGGTACCACA Gene: Sputw3181_0947: GCN5-related N-acetyltransferase (GNAT) domain |
|
GCN5-related N-acetyltransferase (GNAT) domain |
| CRON 2. | |||||||||||||||||
| Sbal_3352 |
|
*
Shewanella baltica OS155 Site: position = -54 score = 8.60848 sequence = TGCGGTACCA-(14)-TTTGTATTTT-(3)-CAGTACCAGT Gene: Sbal_3352: Transcriptional regulator, GntR famil? |
|
|
|
|
|
|
|
*
Shewanella putrefaciens CN-32 Site: position = -53 score = 10.0764 sequence = TGTGGTACCG-(14)-TTTGTATTTT-(3)-CAGTACCAGT Gene: Sputcn32_3003: Transcriptional regulator, GntR famil? |
|
|
|
|
*
Shewanella sp W3-18-1 Site: position = -53 score = 9.32455 sequence = TGTGGTACCG-(14)-TTTGCATTTT-(3)-CAGTACCAGT Gene: Sputw3181_0946: Transcriptional regulator, GntR famil? |
|
Transcriptional regulator, GntR famil? |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |