Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Mmwyl1_0910 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043
Hahella chejuensis KCTC 2396 1 1
Marinomonas sp. MWYL1 2 1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Marinobacter sp. ELB17
Marinobacter aqueolei
Cellvibrio japonicus Ueda107
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
*2
Marinomonas sp. MWYL1

Site:
position = -208
score = 8.27834
sequence = AATTGTACTCT-(19)-ATCTGTGTTCT

Gene: Mmwyl1_0911: Permease of the drug/metabolite transporter (DMT) superfamily

Gene: Mmwyl1_0075: Permease of the drug/metabolite transporter (DMT) superfamily
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Cellvibrio japonicus Ueda107
Permease of the drug/metabolite transporter (DMT) superfamily
PF01810
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0912: Lysine-type exporter protein (LYSE/YGGA)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Marinobacter sp. ELB17

Gene: MELB17_00745: Lysine-type exporter protein (LYSE/YGGA)
 
Marinobacter aqueolei
 
Cellvibrio japonicus Ueda107
Lysine-type exporter protein (LYSE/YGGA)
 
CRON 2.
gadB
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
*
Hahella chejuensis KCTC 2396

Site:
position = -100
score = 7.38534
sequence = AATTGTACTCT-(19)-TACTGTTATGC

Gene: HCH_00706: Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28)
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Cellvibrio japonicus Ueda107
Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD