Regulog Aave_3430 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 2 | 2 |
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 2 | 2 |
| Delftia acidovorans SPH-1 | 2 | 2 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | 2 | 2 |
| Polaromonas sp. JS666 | 2 | 2 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 2 | 2 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| CtesDRAFT_5133 |
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Comamonas testosteroni KF-1 Site: position = -102 score = 19.1635 sequence = ACAGATACAGATTG-(11)-AGCAGAACAGATAC-(9)-CGCGCTGCTACGCC-(11)-GTTGCTGTGCCTGT Gene: CtesDRAFT_5133: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||
| Aave_3431 |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -151 score = 19.9735 sequence = ACAGATACAGACAG-(11)-ACCATAACAGAGGC-(9)-CGCACTGTTCTCCT-(11)-CCGCCTGTGCCTGC Gene: Aave_3431: hypothetical protein |
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hypothetical protein |
| CRON 3. | ||||||||||||
| Pnap_3430 |
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Polaromonas naphthalenivorans CJ2 Site: position = -148 score = 20.9371 sequence = ACAGATACAGCCGA-(11)-ACCATAACAGATGC-(9)-ACGCCTGTTCCGGT-(11)-CGGGCTGTGGCTGT Gene: Pnap_3430: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||||
| Vapar_0984 |
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Variovorax paradoxus S110 Site: position = -140 score = 21.3672 sequence = ACAGATGCAGTTGC-(11)-ACCATAACAGATGC-(9)-ACCGCTGTTCCGGT-(11)-GGGTGTGTGCCTGT Gene: Vapar_0984: hypothetical protein |
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hypothetical protein |
| CRON 5. | ||||||||||||
| Bpro_2662 |
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Polaromonas sp. JS666 Site: position = -130 score = 18.292 sequence = ACAGCCACAGATGG-(11)-ACCATAACAGATGG-(8)-CCATCTGTACCGAT-(11)-TTGATTGCCTCTGT Gene: Bpro_2662: hypothetical protein |
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hypothetical protein |
| CRON 6. | ||||||||||||
| Aave_3430 |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -161 score = 14.6389 sequence = GCAGGCACAGGCGG-(11)-AGGAGAACAGTGCG-(9)-GCCTCTGTTATGGT-(11)-CTGTCTGTATCTGT Gene: Aave_3430: Transcriptional regulator, GntR family |
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Comamonas testosteroni KF-1 Site: position = -108 score = 13.5339 sequence = ACAGGCACAGCAAC-(11)-GGCGTAGCAGCGCG-(9)-GTATCTGTTCTGCT-(11)-CAATCTGTATCTGT Gene: CtesDRAFT_4867: Transcriptional regulator, GntR family |
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Delftia acidovorans SPH-1 Site: position = -157 score = 12.9936 sequence = ACAGGCACAGCCCG-(11)-ATCGCAGCAGTGCA-(9)-GGATCTGTTGTGCT-(11)-GGATCTGTATCTGT Gene: Daci_5367: Transcriptional regulator, GntR family |
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Polaromonas naphthalenivorans CJ2 Site: position = -118 score = 16.1933 sequence = ACAGCCACAGCCCG-(11)-ACCGGAACAGGCGT-(9)-GCATCTGTTATGGT-(11)-TCGGCTGTATCTGT Gene: Pnap_3431: Transcriptional regulator, GntR family |
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Polaromonas sp. JS666 Site: position = -137 score = 15.368 sequence = ACAGAGGCAATCAA-(11)-ATCGGTACAGATGG-(8)-CCATCTGTTATGGT-(11)-CCATCTGTGGCTGT Gene: Bpro_2661: Transcriptional regulator, GntR family |
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Variovorax paradoxus S110 Site: position = -120 score = 14.2479 sequence = ACAGGCACACACCC-(11)-ACCGGAACAGCGGT-(9)-GCATCTGTTATGGT-(11)-GCAACTGCATCTGT Gene: Vapar_0983: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
| CRON 7. | ||||||||||||
| Daci_5368 |
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Delftia acidovorans SPH-1 Site: position = 35 score = 18.0967 sequence = ACAGATACAGATCC-(11)-AGCACAACAGATCC-(9)-TGCACTGCTGCGAT-(11)-CGGGCTGTGCCTGT Gene: Daci_5368: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |