Regulog Aave_3430 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	2	2
Acidovorax sp. JS42
Comamonas testosteroni KF-1	2	2
Delftia acidovorans SPH-1	2	2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2	2	2
Polaromonas sp. JS666	2	2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	2	2
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
CtesDRAFT_5133	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -102 score = 19.1635 sequence = ACAGATACAGATTG-(11)-AGCAGAACAGATAC-(9)-CGCGCTGCTACGCC-(11)-GTTGCTGTGCCTGT Gene: CtesDRAFT_5133: hypothetical protein	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein

CRON 2.
Aave_3431	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -151 score = 19.9735 sequence = ACAGATACAGACAG-(11)-ACCATAACAGAGGC-(9)-CGCACTGTTCTCCT-(11)-CCGCCTGTGCCTGC Gene: Aave_3431: hypothetical protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein

CRON 3.
Pnap_3430	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	* Polaromonas naphthalenivorans CJ2 Site: position = -148 score = 20.9371 sequence = ACAGATACAGCCGA-(11)-ACCATAACAGATGC-(9)-ACGCCTGTTCCGGT-(11)-CGGGCTGTGGCTGT Gene: Pnap_3430: hypothetical protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein

CRON 4.
Vapar_0984	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -140 score = 21.3672 sequence = ACAGATGCAGTTGC-(11)-ACCATAACAGATGC-(9)-ACCGCTGTTCCGGT-(11)-GGGTGTGTGCCTGT Gene: Vapar_0984: hypothetical protein	Verminephrobacter eiseniae EF01-2	hypothetical protein

CRON 5.
Bpro_2662	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -130 score = 18.292 sequence = ACAGCCACAGATGG-(11)-ACCATAACAGATGG-(8)-CCATCTGTACCGAT-(11)-TTGATTGCCTCTGT Gene: Bpro_2662: hypothetical protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein

CRON 6.
Aave_3430	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -161 score = 14.6389 sequence = GCAGGCACAGGCGG-(11)-AGGAGAACAGTGCG-(9)-GCCTCTGTTATGGT-(11)-CTGTCTGTATCTGT Gene: Aave_3430: Transcriptional regulator, GntR family	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -108 score = 13.5339 sequence = ACAGGCACAGCAAC-(11)-GGCGTAGCAGCGCG-(9)-GTATCTGTTCTGCT-(11)-CAATCTGTATCTGT Gene: CtesDRAFT_4867: Transcriptional regulator, GntR family	* Delftia acidovorans SPH-1 Site: position = -157 score = 12.9936 sequence = ACAGGCACAGCCCG-(11)-ATCGCAGCAGTGCA-(9)-GGATCTGTTGTGCT-(11)-GGATCTGTATCTGT Gene: Daci_5367: Transcriptional regulator, GntR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	* Polaromonas naphthalenivorans CJ2 Site: position = -118 score = 16.1933 sequence = ACAGCCACAGCCCG-(11)-ACCGGAACAGGCGT-(9)-GCATCTGTTATGGT-(11)-TCGGCTGTATCTGT Gene: Pnap_3431: Transcriptional regulator, GntR family	* Polaromonas sp. JS666 Site: position = -137 score = 15.368 sequence = ACAGAGGCAATCAA-(11)-ATCGGTACAGATGG-(8)-CCATCTGTTATGGT-(11)-CCATCTGTGGCTGT Gene: Bpro_2661: Transcriptional regulator, GntR family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -120 score = 14.2479 sequence = ACAGGCACACACCC-(11)-ACCGGAACAGCGGT-(9)-GCATCTGTTATGGT-(11)-GCAACTGCATCTGT Gene: Vapar_0983: Transcriptional regulator, GntR family	Verminephrobacter eiseniae EF01-2	Transcriptional regulator, GntR family

CRON 7.
Daci_5368	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = 35 score = 18.0967 sequence = ACAGATACAGATCC-(11)-AGCACAACAGATCC-(9)-TGCACTGCTGCGAT-(11)-CGGGCTGTGCCTGT Gene: Daci_5368: hypothetical protein	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Aave_3430 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --