Regulog YrdX - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16	7	1
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
h16_A1957	Cupriavidus taiwanensis	* Ralstonia eutropha H16 Site: position = -105 score = 4.62702 sequence = GTGGCACAT-(2)-GTTGCGGAT Site: position = -142 score = 6.54693 sequence = CTTGATTGG-(2)-ATTGATCGC Gene: H16_A1957: hypothetical protein	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	hypothetical protein
COG388	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1956: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1955: Biotin synthase-related radical SAM domain protein	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Biotin synthase-related radical SAM domain protein
h16_A1954	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1954: GCN5-related N-acetyltransferase	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	GCN5-related N-acetyltransferase
COG2144	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1953: AIR synthase related protein/Selenophosphate synthetase-related	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	AIR synthase related protein/Selenophosphate synthetase-related
h16_A1952	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1952: hypothetical protein	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	hypothetical protein
trkA	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A1951: FAD dependent oxidoreductase	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	FAD dependent oxidoreductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --