Regulog OapR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/MocR
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 2 | 1 |
| Bordetella bronchiseptica RB50 | 2 | 1 |
| Bordetella petrii DSM 12804 | 2 | 1 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| oapT |
*
Bordetella avium 197N Site: position = -192 score = 13.8752 sequence = ATCTGTACAGTT-(11)-ACCAATACAGCT-(15)-GATTGTATATTT Gene: BAV0504: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent |
*
Bordetella bronchiseptica RB50 Site: position = -204 score = 14.4444 sequence = TTCTGTACAGTT-(11)-AACTACACAGTT-(15)-GATTGTATATTT Gene: BB0869: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent |
*
Bordetella petrii DSM 12804 Site: position = -168 score = 14.222 sequence = ATCAATACAGTA-(11)-ACCTGTACAGTT-(15)-GATTGTATATTT Gene: Bpet4037: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent |
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent |
| oapD |
Gene: BAV0503: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) |
Gene: BB0868: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) |
Gene: Bpet4038: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) |
Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |