Regulog OapR - Alcaligenaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Bordetella avium 197N	2	1
Bordetella bronchiseptica RB50	2	1
Bordetella petrii DSM 12804	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes				Function

CRON 1.
oapT	* Bordetella avium 197N Site: position = -192 score = 13.8752 sequence = ATCTGTACAGTT-(11)-ACCAATACAGCT-(15)-GATTGTATATTT Gene: BAV0504: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent	* Bordetella bronchiseptica RB50 Site: position = -204 score = 14.4444 sequence = TTCTGTACAGTT-(11)-AACTACACAGTT-(15)-GATTGTATATTT Gene: BB0869: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent	* Bordetella petrii DSM 12804 Site: position = -168 score = 14.222 sequence = ATCAATACAGTA-(11)-ACCTGTACAGTT-(15)-GATTGTATATTT Gene: Bpet4037: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent	Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
oapD	Bordetella avium 197N Gene: BAV0503: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)	Bordetella bronchiseptica RB50 Gene: BB0868: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)	Bordetella petrii DSM 12804 Gene: Bpet4038: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)	Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --