Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog OapR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 2 1
Ralstonia eutropha H16 2 1
Ralstonia eutropha JMP134 2 1
Ralstonia metallidurans CH34 2 1
Ralstonia pickettii 12J 2 1
Ralstonia solanacearum GMI1000 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
oapT
*
Cupriavidus taiwanensis

Site:
position = -156
score = 14.1547
sequence = GCCTGTACGGTC-(11)-AACTGTACGGTA-(15)-GACTGTATATTT

Gene: RALTA_A0212: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
*
Ralstonia eutropha H16

Site:
position = -161
score = 14.2628
sequence = GCCTGTACGGTT-(11)-AACTGCACGGTA-(15)-GACTGTATATTT

Gene: H16_A0272: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
*
Ralstonia eutropha JMP134

Site:
position = -171
score = 14.5759
sequence = TCCTGTACGGTT-(11)-AACTGTACGGTA-(15)-GACTGTATATTT

Gene: Reut_A0248: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
*
Ralstonia metallidurans CH34

Site:
position = -166
score = 13.2971
sequence = ACCTGTACGGTT-(11)-AACTGTACGGTA-(15)-GACCGTATATTC

Gene: Rmet_0205: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
*
Ralstonia pickettii 12J

Site:
position = -125
score = 14.3337
sequence = GCCTATACAGTT-(15)-ATCTGTGCATGT-(15)-CTCTGTACAGTT

Gene: Rpic_4273: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
*
Ralstonia solanacearum GMI1000

Site:
position = -114
score = 14.4369
sequence = ACCTATACAGTT-(15)-ATCTGTGCATGT-(15)-CTCTGTACAGTT

Gene: RS02393: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), PLP dependent
oapD
 
Cupriavidus taiwanensis

Gene: RALTA_A0213: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
 
Ralstonia eutropha H16

Gene: H16_A0273: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
 
Ralstonia eutropha JMP134

Gene: Reut_A0249: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
 
Ralstonia metallidurans CH34

Gene: Rmet_0206: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
 
Ralstonia pickettii 12J

Gene: Rpic_4274: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
 
Ralstonia solanacearum GMI1000

Gene: RS02392: Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
Predicted NAD-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise