Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PP2642 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp
Pseudomonas putida KT2440 2 1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2871 (NqrF)
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -11
score = 13.2429
sequence = AGCTGGACCA-(14)-AACTGGAGGT-(5)-TGGTCCTGGA

Gene: PP2641: iron-sulfur cluster-binding protein\NADH:ubiquinone oxidoreductase, subunit NqrF
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
iron-sulfur cluster-binding protein\NADH:ubiquinone oxidoreductase, subunit NqrF
PF00583
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP2640: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
GCN5-related N-acetyltransferase (GNAT) domain
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD