Regulog PdxW - Sphingobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:	Pyridoxal-5-phosphate
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Sphingobacteria
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Algoriphagus sp. PR1
Chitinophaga pinensis DSM 2588	2	1
Cytophaga hutchinsonii ATCC 33406
Dyadobacter fermentans DSM 18053	1	1
Microscilla marina ATCC 23134
Pedobacter heparinus DSM 2366
Pedobacter sp. BAL39
Salinibacter ruber DSM 13855

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
COG1670	Algoriphagus sp. PR1	* Chitinophaga pinensis DSM 2588 Site: position = -221 score = 12.3049 sequence = AATTGGACTAT-(12)-AATTGGACTAT-(4)-GTAATCCAATG Gene: Cpin_2638: GCN5-related N-acetyltransferase	Cytophaga hutchinsonii ATCC 33406 Gene: CHU_2452: GCN5-related N-acetyltransferase	Dyadobacter fermentans DSM 18053	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39 Gene: PBAL39_18794: GCN5-related N-acetyltransferase	Salinibacter ruber DSM 13855	GCN5-related N-acetyltransferase
PF00583	Algoriphagus sp. PR1 Gene: ALPR1_16374: GCN5-related N-acetyltransferase	Chitinophaga pinensis DSM 2588 Gene: Cpin_2639: GCN5-related N-acetyltransferase	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053	Microscilla marina ATCC 23134 Gene: M23134_03438: GCN5-related N-acetyltransferase	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39 Gene: PBAL39_23187: GCN5-related N-acetyltransferase	Salinibacter ruber DSM 13855	GCN5-related N-acetyltransferase

CRON 2.
pdxO	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588	Cytophaga hutchinsonii ATCC 33406	* Dyadobacter fermentans DSM 18053 Site: position = -78 score = 12.5159 sequence = AATTGGACCAC-(12)-TATTGGATTAA-(4)-CTGAGCCAATT Gene: Dfer_1192: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxW - Sphingobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --