Regulog PdxW - Sphingobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingobacteria
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Algoriphagus sp. PR1 | ||
| Chitinophaga pinensis DSM 2588 | 2 | 1 |
| Cytophaga hutchinsonii ATCC 33406 | ||
| Dyadobacter fermentans DSM 18053 | 1 | 1 |
| Microscilla marina ATCC 23134 | ||
| Pedobacter heparinus DSM 2366 | ||
| Pedobacter sp. BAL39 | ||
| Salinibacter ruber DSM 13855 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| COG1670 |
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Chitinophaga pinensis DSM 2588 Site: position = -221 score = 12.3049 sequence = AATTGGACTAT-(12)-AATTGGACTAT-(4)-GTAATCCAATG Gene: Cpin_2638: GCN5-related N-acetyltransferase |
Gene: CHU_2452: GCN5-related N-acetyltransferase |
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Gene: PBAL39_18794: GCN5-related N-acetyltransferase |
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GCN5-related N-acetyltransferase |
| PF00583 |
Gene: ALPR1_16374: GCN5-related N-acetyltransferase |
Gene: Cpin_2639: GCN5-related N-acetyltransferase |
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Gene: M23134_03438: GCN5-related N-acetyltransferase |
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Gene: PBAL39_23187: GCN5-related N-acetyltransferase |
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GCN5-related N-acetyltransferase |
| CRON 2. | |||||||||
| pdxO |
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Dyadobacter fermentans DSM 18053 Site: position = -78 score = 12.5159 sequence = AATTGGACCAC-(12)-TATTGGATTAA-(4)-CTGAGCCAATT Gene: Dfer_1192: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |