Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Cpin_4623 - Sphingobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Algoriphagus sp. PR1
Chitinophaga pinensis DSM 2588 1 1
Cytophaga hutchinsonii ATCC 33406
Dyadobacter fermentans DSM 18053 1 1
Microscilla marina ATCC 23134
Pedobacter heparinus DSM 2366
Pedobacter sp. BAL39 1 1
Salinibacter ruber DSM 13855
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
 
Algoriphagus sp. PR1
*
Chitinophaga pinensis DSM 2588

Site:
position = -110
score = 13.1766
sequence = AACCGGACTAT-(12)-AACTGGCACCT-(4)-ACCTACCGGCA

Gene: Cpin_4622: Biotin synthase (EC 2.8.1.6)
 
Cytophaga hutchinsonii ATCC 33406

Gene: CHU_2466: Biotin synthase (EC 2.8.1.6)
 
Dyadobacter fermentans DSM 18053

Gene: Dfer_4292: Biotin synthase (EC 2.8.1.6)
 
Microscilla marina ATCC 23134

Gene: M23134_00622: Biotin synthase (EC 2.8.1.6)
 
Pedobacter heparinus DSM 2366

Gene: Phep_2168: Biotin synthase (EC 2.8.1.6)
 
Pedobacter sp. BAL39

Gene: PBAL39_21310: Biotin synthase (EC 2.8.1.6)
 
Salinibacter ruber DSM 13855

Gene: SRU_0756: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
 
CRON 2.
omp
 
Algoriphagus sp. PR1

Gene: ALPR1_19048: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_4414: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Cytophaga hutchinsonii ATCC 33406
*
Dyadobacter fermentans DSM 18053

Site:
position = -82
score = 13.5162
sequence = AACCGGACTAC-(12)-AACCGGAGCAT-(4)-ACGGTCCGGCA

Gene: Dfer_3315: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Microscilla marina ATCC 23134
 
Pedobacter heparinus DSM 2366

Gene: Phep_2526: TonB-dependent receptor domain protein, putative outer membrane transporter
*
Pedobacter sp. BAL39

Site:
position = -79
score = 13.5705
sequence = AACCGGACCAT-(12)-AACTGGTATAC-(4)-GTGGTACGGCA

Gene: PBAL39_24293: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Salinibacter ruber DSM 13855

Gene: SRU_2735: TonB-dependent receptor domain protein, putative outer membrane transporter
TonB-dependent receptor domain protein, putative outer membrane transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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