Regulog Cpin_4623 - Sphingobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingobacteria
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Algoriphagus sp. PR1 | ||
| Chitinophaga pinensis DSM 2588 | 1 | 1 |
| Cytophaga hutchinsonii ATCC 33406 | ||
| Dyadobacter fermentans DSM 18053 | 1 | 1 |
| Microscilla marina ATCC 23134 | ||
| Pedobacter heparinus DSM 2366 | ||
| Pedobacter sp. BAL39 | 1 | 1 |
| Salinibacter ruber DSM 13855 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| bioB |
|
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Chitinophaga pinensis DSM 2588 Site: position = -110 score = 13.1766 sequence = AACCGGACTAT-(12)-AACTGGCACCT-(4)-ACCTACCGGCA Gene: Cpin_4622: Biotin synthase (EC 2.8.1.6) |
Gene: CHU_2466: Biotin synthase (EC 2.8.1.6) |
Gene: Dfer_4292: Biotin synthase (EC 2.8.1.6) |
Gene: M23134_00622: Biotin synthase (EC 2.8.1.6) |
Gene: Phep_2168: Biotin synthase (EC 2.8.1.6) |
Gene: PBAL39_21310: Biotin synthase (EC 2.8.1.6) |
Gene: SRU_0756: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| CRON 2. | |||||||||
| omp |
Gene: ALPR1_19048: TonB-dependent receptor domain protein, putative outer membrane transporter |
Gene: Cpin_4414: TonB-dependent receptor domain protein, putative outer membrane transporter |
|
*
Dyadobacter fermentans DSM 18053 Site: position = -82 score = 13.5162 sequence = AACCGGACTAC-(12)-AACCGGAGCAT-(4)-ACGGTCCGGCA Gene: Dfer_3315: TonB-dependent receptor domain protein, putative outer membrane transporter |
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Gene: Phep_2526: TonB-dependent receptor domain protein, putative outer membrane transporter |
*
Pedobacter sp. BAL39 Site: position = -79 score = 13.5705 sequence = AACCGGACCAT-(12)-AACTGGTATAC-(4)-GTGGTACGGCA Gene: PBAL39_24293: TonB-dependent receptor domain protein, putative outer membrane transporter |
Gene: SRU_2735: TonB-dependent receptor domain protein, putative outer membrane transporter |
TonB-dependent receptor domain protein, putative outer membrane transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |