Regulog PdxQ - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:	Pyridoxal-5-phosphate
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099	5	2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
pdxO2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -87 score = 12.855 sequence = AACTGGACTAC-(13)-GACTGGCTGTT-(4)-ATAGGCCAGCT Gene: mlr6176: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
PF01810	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr6177: Lysine-type exporter protein (LYSE/YGGA)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Lysine-type exporter protein (LYSE/YGGA)

CRON 2.
COG3382	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -141 score = 10.6392 sequence = TACTGGACCAA-(13)-AAGTGGCAGTT-(4)-TTGGACCAGTG Gene: mll6378: hypothetical protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	hypothetical protein
PF01810	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4268: Lysine-type exporter protein (LYSE/YGGA)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll6377: Lysine-type exporter protein (LYSE/YGGA)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3247A: Lysine-type exporter protein (LYSE/YGGA)	Rhizobium sp. NGR234 Gene: NGR_b00150: Lysine-type exporter protein (LYSE/YGGA)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Lysine-type exporter protein (LYSE/YGGA)
PF00701	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0899: Dihydrodipicolinate synthase	Azorhizobium caulinodans ORS 571 Gene: AZC_2692: Dihydrodipicolinate synthase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll6376: Dihydrodipicolinate synthase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0883: Dihydrodipicolinate synthase	Rhizobium etli CFN 42 Gene: RHE_CH02792: Dihydrodipicolinate synthase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3247: Dihydrodipicolinate synthase	Rhizobium sp. NGR234 Gene: NGR_b00160: Dihydrodipicolinate synthase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21508: Dihydrodipicolinate synthase	Xanthobacter autotrophicus Py2	Dihydrodipicolinate synthase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --