Regulog Cpin_4810 - Sphingobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Sphingobacteria
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Algoriphagus sp. PR1
Chitinophaga pinensis DSM 2588	3	2
Cytophaga hutchinsonii ATCC 33406
Dyadobacter fermentans DSM 18053	5	2
Microscilla marina ATCC 23134	1	1
Pedobacter heparinus DSM 2366	2	1
Pedobacter sp. BAL39
Salinibacter ruber DSM 13855

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF00583	Algoriphagus sp. PR1	* Chitinophaga pinensis DSM 2588 Site: position = -82 score = 6.94852 sequence = AACTGTGTC-(21)-GACTGTATT Gene: Cpin_4809: GCN5-related N-acetyltransferase domain	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053	Microscilla marina ATCC 23134 Gene: M23134_01958: GCN5-related N-acetyltransferase domain	Pedobacter heparinus DSM 2366 Gene: Phep_1633: GCN5-related N-acetyltransferase domain	Pedobacter sp. BAL39 Gene: PBAL39_25155: GCN5-related N-acetyltransferase domain	Salinibacter ruber DSM 13855	GCN5-related N-acetyltransferase domain

CRON 2.
PF00892	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588 Gene: Cpin_2926: Permeases of the drug/metabolite transporter (DMT) superfamily	Cytophaga hutchinsonii ATCC 33406	* Dyadobacter fermentans DSM 18053 Site: position = -86 score = 8.42024 sequence = ATCTGTTAT-(21)-ATCTGTTTT Site: position = -116 score = 7.36397 sequence = AGCTGTTCT-(21)-ATCTGTTAT Gene: Dfer_1183: Permeases of the drug/metabolite transporter (DMT) superfamily	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39 Gene: PBAL39_20645: Permeases of the drug/metabolite transporter (DMT) superfamily	Salinibacter ruber DSM 13855	Permeases of the drug/metabolite transporter (DMT) superfamily
PF07609	Algoriphagus sp. PR1 Gene: ALPR1_11645: hypothetical protein	Chitinophaga pinensis DSM 2588 Gene: Cpin_5789: hypothetical protein	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053 Gene: Dfer_1182: hypothetical protein	Microscilla marina ATCC 23134 Gene: M23134_05009: hypothetical protein	Pedobacter heparinus DSM 2366 Gene: Phep_1673: hypothetical protein	Pedobacter sp. BAL39 Gene: PBAL39_06626: hypothetical protein	Salinibacter ruber DSM 13855	hypothetical protein
PF00282	Algoriphagus sp. PR1	* Chitinophaga pinensis DSM 2588 Site: position = -125 score = 6.0236 sequence = AACTGATCT-(22)-ATCTGGTCA Site: position = -99 score = 7.81167 sequence = ATCTGATCT-(21)-ATCTGTTTT Gene: Cpin_2925: Pyridoxal-dependent decarboxylase	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053 Gene: Dfer_1181: Pyridoxal-dependent decarboxylase	* Microscilla marina ATCC 23134 Site: position = -72 score = 6.17586 sequence = CTCTGTTTT-(22)-TTGTGTAAT Site: position = -103 score = 7.12411 sequence = AACTGATAT-(22)-CTCTGTTTT Gene: M23134_05127: Pyridoxal-dependent decarboxylase	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	Pyridoxal-dependent decarboxylase

CRON 3.
COG1893	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588	Cytophaga hutchinsonii ATCC 33406	* Dyadobacter fermentans DSM 18053 Site: position = -85 score = 7.45654 sequence = AACTGCTAT-(21)-ATCTGCTAT Gene: Dfer_0751: Ketopantoate reductase ApbA/PanE domain protein	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	Ketopantoate reductase ApbA/PanE domain protein
COG1028	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053 Gene: Dfer_0752: short-chain dehydrogenase/reductase SDR	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	short-chain dehydrogenase/reductase SDR

CRON 4.
Phep_3794	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053	Microscilla marina ATCC 23134	* Pedobacter heparinus DSM 2366 Site: position = -83 score = 7.52111 sequence = ATCTGTACC-(21)-ATCTGTATA Gene: Phep_3794: hypothetical protein	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	hypothetical protein
Cpin_4810	Algoriphagus sp. PR1	Chitinophaga pinensis DSM 2588 Gene: Cpin_4810: Transcriptional regulator, GntR family	Cytophaga hutchinsonii ATCC 33406	Dyadobacter fermentans DSM 18053	Microscilla marina ATCC 23134	Pedobacter heparinus DSM 2366 Gene: Phep_3795: Transcriptional regulator, GntR family	Pedobacter sp. BAL39	Salinibacter ruber DSM 13855	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Cpin_4810 - Sphingobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --