Regulog Cpin_4810 - Sphingobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingobacteria
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Algoriphagus sp. PR1 | ||
| Chitinophaga pinensis DSM 2588 | 3 | 2 |
| Cytophaga hutchinsonii ATCC 33406 | ||
| Dyadobacter fermentans DSM 18053 | 5 | 2 |
| Microscilla marina ATCC 23134 | 1 | 1 |
| Pedobacter heparinus DSM 2366 | 2 | 1 |
| Pedobacter sp. BAL39 | ||
| Salinibacter ruber DSM 13855 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF00583 |
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*
Chitinophaga pinensis DSM 2588 Site: position = -82 score = 6.94852 sequence = AACTGTGTC-(21)-GACTGTATT Gene: Cpin_4809: GCN5-related N-acetyltransferase domain |
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Gene: M23134_01958: GCN5-related N-acetyltransferase domain |
Gene: Phep_1633: GCN5-related N-acetyltransferase domain |
Gene: PBAL39_25155: GCN5-related N-acetyltransferase domain |
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GCN5-related N-acetyltransferase domain |
| CRON 2. | |||||||||
| PF00892 |
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Gene: Cpin_2926: Permeases of the drug/metabolite transporter (DMT) superfamily |
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*
Dyadobacter fermentans DSM 18053 Site: position = -86 score = 8.42024 sequence = ATCTGTTAT-(21)-ATCTGTTTT Site: position = -116 score = 7.36397 sequence = AGCTGTTCT-(21)-ATCTGTTAT Gene: Dfer_1183: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Gene: PBAL39_20645: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Permeases of the drug/metabolite transporter (DMT) superfamily |
| PF07609 |
Gene: ALPR1_11645: hypothetical protein |
Gene: Cpin_5789: hypothetical protein |
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Gene: Dfer_1182: hypothetical protein |
Gene: M23134_05009: hypothetical protein |
Gene: Phep_1673: hypothetical protein |
Gene: PBAL39_06626: hypothetical protein |
|
hypothetical protein |
| PF00282 |
|
*
Chitinophaga pinensis DSM 2588 Site: position = -125 score = 6.0236 sequence = AACTGATCT-(22)-ATCTGGTCA Site: position = -99 score = 7.81167 sequence = ATCTGATCT-(21)-ATCTGTTTT Gene: Cpin_2925: Pyridoxal-dependent decarboxylase |
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Gene: Dfer_1181: Pyridoxal-dependent decarboxylase |
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Microscilla marina ATCC 23134 Site: position = -72 score = 6.17586 sequence = CTCTGTTTT-(22)-TTGTGTAAT Site: position = -103 score = 7.12411 sequence = AACTGATAT-(22)-CTCTGTTTT Gene: M23134_05127: Pyridoxal-dependent decarboxylase |
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Pyridoxal-dependent decarboxylase |
| CRON 3. | |||||||||
| COG1893 |
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*
Dyadobacter fermentans DSM 18053 Site: position = -85 score = 7.45654 sequence = AACTGCTAT-(21)-ATCTGCTAT Gene: Dfer_0751: Ketopantoate reductase ApbA/PanE domain protein |
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Ketopantoate reductase ApbA/PanE domain protein |
| COG1028 |
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Gene: Dfer_0752: short-chain dehydrogenase/reductase SDR |
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short-chain dehydrogenase/reductase SDR |
| CRON 4. | |||||||||
| Phep_3794 |
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*
Pedobacter heparinus DSM 2366 Site: position = -83 score = 7.52111 sequence = ATCTGTACC-(21)-ATCTGTATA Gene: Phep_3794: hypothetical protein |
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hypothetical protein |
| Cpin_4810 |
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Gene: Cpin_4810: Transcriptional regulator, GntR family |
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Gene: Phep_3795: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |