Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MSMEG_4140 - Mycobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium abscessus ATCC 19977 1 1
Mycobacterium avium 104
Mycobacterium marinum M
Mycobacterium leprae TN
Mycobacterium smegmatis str. MC2 155 5 4
Mycobacterium tuberculosis H37Rv
Mycobacterium vanbaalenii PYR-1 1 1
Mycobacterium sp. JLS 2 2
Mycobacterium flavescens PYR-GCK 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pcaC
*
Mycobacterium abscessus ATCC 19977

Site:
position = -69
score = 9.4807
sequence = GAATTGGCCCAC-(12)-GAATTGAACCAT

Gene: MAB_0197: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -68
score = 8.63743
sequence = GAATTGGCCCGT-(12)-ACATTGAACCAT

Gene: MSMEG_6370: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
 
Mycobacterium tuberculosis H37Rv
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -27
score = 9.75176
sequence = GAATTGGCCCAT-(12)-GAATTGAACCAT

Gene: Mvan_5624: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Mycobacterium sp. JLS

Site:
position = -69
score = 9.14689
sequence = GGATTGGCCCAC-(12)-GAATTGAACCAT

Gene: Mjls_5378: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Mycobacterium flavescens PYR-GCK

Site:
position = -40
score = 9.66377
sequence = GAATTGGACCAC-(12)-GAATTGAACCAT

Gene: Mflv_1182: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
 
CRON 2.
PF00892
 
Mycobacterium abscessus ATCC 19977
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -30
score = 6.69468
sequence = CATTTGGTCCAT-(12)-AACTTGGTGCTG

Gene: MSMEG_1571: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium sp. JLS
 
Mycobacterium flavescens PYR-GCK
Permeases of the drug/metabolite transporter (DMT) superfamily
 
CRON 3.
PF07883
 
Mycobacterium abscessus ATCC 19977
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -71
score = 7.32226
sequence = CAACTGGACCCC-(12)-GAAGTGGACCCA

Gene: MSMEG_5761: Cupin 2, conserved barrel domain protein
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium vanbaalenii PYR-1
*
Mycobacterium sp. JLS

Site:
position = -70
score = 7.33331
sequence = TGATTGGCCCAC-(12)-GAAATGGACCGG

Gene: Mjls_4486: Cupin 2, conserved barrel domain protein
 
Mycobacterium flavescens PYR-GCK
Cupin 2, conserved barrel domain protein
 
CRON 4.
MSMEG_4137
 
Mycobacterium abscessus ATCC 19977
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -119
score = 8.0666
sequence = GAAGTGGCCCAA-(12)-AGAATGGACCAG

Gene: MSMEG_4137: hypothetical protein
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium sp. JLS
 
Mycobacterium flavescens PYR-GCK
hypothetical protein
MSMEG_4136
 
Mycobacterium abscessus ATCC 19977
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_4136: epimerase-dehydratase, putative
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium sp. JLS
 
Mycobacterium flavescens PYR-GCK
epimerase-dehydratase, putative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD