Regulog MSMEG_4140 - Mycobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium abscessus ATCC 19977 | 1 | 1 |
| Mycobacterium avium 104 | ||
| Mycobacterium marinum M | ||
| Mycobacterium leprae TN | ||
| Mycobacterium smegmatis str. MC2 155 | 5 | 4 |
| Mycobacterium tuberculosis H37Rv | ||
| Mycobacterium vanbaalenii PYR-1 | 1 | 1 |
| Mycobacterium sp. JLS | 2 | 2 |
| Mycobacterium flavescens PYR-GCK | 1 | 1 |
| Genes | Function | |||||||||
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| CRON 1. | ||||||||||
| pcaC |
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Mycobacterium abscessus ATCC 19977 Site: position = -69 score = 9.4807 sequence = GAATTGGCCCAC-(12)-GAATTGAACCAT Gene: MAB_0197: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
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Mycobacterium smegmatis str. MC2 155 Site: position = -68 score = 8.63743 sequence = GAATTGGCCCGT-(12)-ACATTGAACCAT Gene: MSMEG_6370: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
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Mycobacterium vanbaalenii PYR-1 Site: position = -27 score = 9.75176 sequence = GAATTGGCCCAT-(12)-GAATTGAACCAT Gene: Mvan_5624: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
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Mycobacterium sp. JLS Site: position = -69 score = 9.14689 sequence = GGATTGGCCCAC-(12)-GAATTGAACCAT Gene: Mjls_5378: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
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Mycobacterium flavescens PYR-GCK Site: position = -40 score = 9.66377 sequence = GAATTGGACCAC-(12)-GAATTGAACCAT Gene: Mflv_1182: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
| CRON 2. | ||||||||||
| PF00892 |
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Mycobacterium smegmatis str. MC2 155 Site: position = -30 score = 6.69468 sequence = CATTTGGTCCAT-(12)-AACTTGGTGCTG Gene: MSMEG_1571: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Permeases of the drug/metabolite transporter (DMT) superfamily |
| CRON 3. | ||||||||||
| PF07883 |
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Mycobacterium smegmatis str. MC2 155 Site: position = -71 score = 7.32226 sequence = CAACTGGACCCC-(12)-GAAGTGGACCCA Gene: MSMEG_5761: Cupin 2, conserved barrel domain protein |
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Mycobacterium sp. JLS Site: position = -70 score = 7.33331 sequence = TGATTGGCCCAC-(12)-GAAATGGACCGG Gene: Mjls_4486: Cupin 2, conserved barrel domain protein |
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Cupin 2, conserved barrel domain protein |
| CRON 4. | ||||||||||
| MSMEG_4137 |
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Mycobacterium smegmatis str. MC2 155 Site: position = -119 score = 8.0666 sequence = GAAGTGGCCCAA-(12)-AGAATGGACCAG Gene: MSMEG_4137: hypothetical protein |
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hypothetical protein |
| MSMEG_4136 |
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Gene: MSMEG_4136: epimerase-dehydratase, putative |
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epimerase-dehydratase, putative |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |