Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdfD/YisV - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor (activator)
Biological process: Metabolite transport
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052 1 1
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521
Clostridium kluyveri DSM 555 1 1
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yisU
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2593: Hypothetical efflux transporter, LysE family
*
Clostridium beijerincki NCIMB 8052

Site:
position = -88
score = 8.61748
sequence = TGGTTGG-(17)-TGGTTGG

Gene: Cbei_2084: Hypothetical efflux transporter, LysE family
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
*
Clostridium kluyveri DSM 555

Site:
position = -116
score = 8.13894
sequence = TGGTTGG-(17)-TGGATGG

Gene: CKL_2223: Hypothetical efflux transporter, LysE family
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Hypothetical efflux transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD