Regulog YdfD/YisV - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:	repressor (activator)
Biological process:	Metabolite transport
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Macrococcus caseolyticus JCSC5402
Staphylococcus aureus subsp. aureus N315	1	1
Staphylococcus capitis SK14	2	1
Staphylococcus carnosus subsp. carnosus TM300	1	1
Staphylococcus epidermidis ATCC 12228
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
ydfC	Macrococcus caseolyticus JCSC5402	* Staphylococcus aureus subsp. aureus N315 Site: position = -91 score = 6.7502 sequence = TGGATAG-(17)-TGGTTGT Gene: SA0103: Permease of the drug/metabolite transporter (DMT) superfamily	Staphylococcus capitis SK14	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus epidermidis ATCC 12228	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Permease of the drug/metabolite transporter (DMT) superfamily

CRON 2.
desA	Macrococcus caseolyticus JCSC5402	Staphylococcus aureus subsp. aureus N315	* Staphylococcus capitis SK14 Site: position = -78 score = 7.69569 sequence = TGGTTGG-(16)-TGGTAGT Gene: STACA0001_1859: putative fatty acid desaturase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus epidermidis ATCC 12228	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	putative fatty acid desaturase
yisU	Macrococcus caseolyticus JCSC5402	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14 Gene: STACA0001_1860: Hypothetical efflux transporter, LysE family	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -731 score = 8.17505 sequence = TGGTTGG-(16)-TGGTAGG Gene: Sca_0253: Hypothetical efflux transporter, LysE family	Staphylococcus epidermidis ATCC 12228	Staphylococcus haemolyticus JCSC1435	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -98 score = 7.96345 sequence = TGGTTGG-(16)-TGGTGGG Gene: SSP2040: Hypothetical efflux transporter, LysE family	Hypothetical efflux transporter, LysE family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdfD/YisV - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --