Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdfD/YisV - Staphylococcaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor (activator)
Biological process: Metabolite transport
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Macrococcus caseolyticus JCSC5402
Staphylococcus aureus subsp. aureus N315 1 1
Staphylococcus capitis SK14 2 1
Staphylococcus carnosus subsp. carnosus TM300 1 1
Staphylococcus epidermidis ATCC 12228
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ydfC
 
Macrococcus caseolyticus JCSC5402
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -91
score = 6.7502
sequence = TGGATAG-(17)-TGGTTGT

Gene: SA0103: Permease of the drug/metabolite transporter (DMT) superfamily
 
Staphylococcus capitis SK14
 
Staphylococcus carnosus subsp. carnosus TM300
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 2.
desA
 
Macrococcus caseolyticus JCSC5402
 
Staphylococcus aureus subsp. aureus N315
*
Staphylococcus capitis SK14

Site:
position = -78
score = 7.69569
sequence = TGGTTGG-(16)-TGGTAGT

Gene: STACA0001_1859: putative fatty acid desaturase
 
Staphylococcus carnosus subsp. carnosus TM300
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
putative fatty acid desaturase
yisU
 
Macrococcus caseolyticus JCSC5402
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14

Gene: STACA0001_1860: Hypothetical efflux transporter, LysE family
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -731
score = 8.17505
sequence = TGGTTGG-(16)-TGGTAGG

Gene: Sca_0253: Hypothetical efflux transporter, LysE family
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -98
score = 7.96345
sequence = TGGTTGG-(16)-TGGTGGG

Gene: SSP2040: Hypothetical efflux transporter, LysE family
Hypothetical efflux transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD