Regulog Csal_3199 - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization; Lactate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - GntR/Others
- By pathway - Glycolate utilization
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Reinekea sp. MED297 | ||
| Oceanospirillum sp. MED92 | ||
| Oceanobacter sp. RED65 | ||
| Marinomonas sp. MWYL1 | ||
| Hahella chejuensis KCTC 2396 | ||
| Chromohalobacter salexigens DSM 3043 | 7 | 3 |
| Alcanivorax borkumensis SK2 | ||
| Marinobacter sp. ELB17 | 6 | 2 |
| Marinobacter aqueolei | ||
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| tctC |
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Marinobacter sp. ELB17 Site: position = -195 score = 4.30135 sequence = ATTATGAATTCATATT Site: position = -42 score = 4.27409 sequence = GTTTTGCTTGCAAATA Gene: MELB17_21610: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
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Gene: MELB17_21605: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
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Gene: MELB17_21600: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
| Csal_3188 |
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Chromohalobacter salexigens DSM 3043 Site: position = -197 score = 4.80447 sequence = ATTATGAATTCAAATT Site: position = -81 score = 3.385 sequence = ATTATGAGTTCATTCT Gene: Csal_3188: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Gene: MELB17_21595: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Enoyl-CoA hydratase (EC 4.2.1.17) |
| Csal_3187 |
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Gene: Csal_3187: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
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Gene: MELB17_21590: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
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Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
| CRON 2. | |||||||||||||
| Csal_3195 |
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Chromohalobacter salexigens DSM 3043 Site: position = -75 score = 4.09432 sequence = AATTGGCTTGCCAAAT Gene: Csal_3195: mandelate racemase/muconate lactonizing enzyme |
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mandelate racemase/muconate lactonizing enzyme |
| tctC |
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Gene: Csal_3196: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
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Gene: Csal_3197: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
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Gene: Csal_3198: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
| CRON 3. | |||||||||||||
| Csal_3199 |
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Chromohalobacter salexigens DSM 3043 Site: position = -128 score = 4.02486 sequence = GAAATGAATTCAAAAT Gene: Csal_3199: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Marinobacter sp. ELB17 Site: position = -110 score = 4.51532 sequence = ATTTTGAATTCTGAAT Gene: MELB17_21620: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Transcriptional regulator associated with tricarboxylic transport, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |