Regulog Csal_3199 - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glycolate utilization; Lactate utilization
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - GntR/Others
By pathway - Glycolate utilization
By pathway - Lactate utilization

Statistics of regulated genes
Genome	Genes	Operons
Reinekea sp. MED297
Oceanospirillum sp. MED92
Oceanobacter sp. RED65
Marinomonas sp. MWYL1
Hahella chejuensis KCTC 2396
Chromohalobacter salexigens DSM 3043	7	3
Alcanivorax borkumensis SK2
Marinobacter sp. ELB17	6	2
Marinobacter aqueolei
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
tctC	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	* Marinobacter sp. ELB17 Site: position = -195 score = 4.30135 sequence = ATTATGAATTCATATT Site: position = -42 score = 4.27409 sequence = GTTTTGCTTGCAAATA Gene: MELB17_21610: Tricarboxylate transport protein TctC, periplasmic binding subunit	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17 Gene: MELB17_21605: Tricarboxylate transport protein TctB, small permease component	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport protein TctB, small permease component
tctA	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17 Gene: MELB17_21600: Tricarboxylate transport membrane protein TctA, large permease component	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport membrane protein TctA, large permease component
Csal_3188	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	* Chromohalobacter salexigens DSM 3043 Site: position = -197 score = 4.80447 sequence = ATTATGAATTCAAATT Site: position = -81 score = 3.385 sequence = ATTATGAGTTCATTCT Gene: Csal_3188: Enoyl-CoA hydratase (EC 4.2.1.17)	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17 Gene: MELB17_21595: Enoyl-CoA hydratase (EC 4.2.1.17)	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Enoyl-CoA hydratase (EC 4.2.1.17)
Csal_3187	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043 Gene: Csal_3187: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17 Gene: MELB17_21590: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase

CRON 2.
Csal_3195	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	* Chromohalobacter salexigens DSM 3043 Site: position = -75 score = 4.09432 sequence = AATTGGCTTGCCAAAT Gene: Csal_3195: mandelate racemase/muconate lactonizing enzyme	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	mandelate racemase/muconate lactonizing enzyme
tctC	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043 Gene: Csal_3196: Tricarboxylate transport protein TctC, periplasmic binding subunit	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043 Gene: Csal_3197: Tricarboxylate transport protein TctB, small permease component	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport protein TctB, small permease component
tctA	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	Chromohalobacter salexigens DSM 3043 Gene: Csal_3198: Tricarboxylate transport membrane protein TctA, large permease component	Alcanivorax borkumensis SK2	Marinobacter sp. ELB17	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Tricarboxylate transport membrane protein TctA, large permease component

CRON 3.
Csal_3199	Reinekea sp. MED297	Oceanospirillum sp. MED92	Oceanobacter sp. RED65	Marinomonas sp. MWYL1	Hahella chejuensis KCTC 2396	* Chromohalobacter salexigens DSM 3043 Site: position = -128 score = 4.02486 sequence = GAAATGAATTCAAAAT Gene: Csal_3199: Transcriptional regulator associated with tricarboxylic transport, GntR family	Alcanivorax borkumensis SK2	* Marinobacter sp. ELB17 Site: position = -110 score = 4.51532 sequence = ATTTTGAATTCTGAAT Gene: MELB17_21620: Transcriptional regulator associated with tricarboxylic transport, GntR family	Marinobacter aqueolei	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Transcriptional regulator associated with tricarboxylic transport, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Csal_3199 - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --