Regulog Daci_3053 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glycolate utilization; Lactate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Glycolate utilization
By pathway - Lactate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1	6	2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666	7	3
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	3	2
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
sgaA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -138 score = 4.63297 sequence = ATTTTGCATTCATTTT Site: position = -72 score = 5.76257 sequence = ATTTTGAATGCAAAAA Gene: Daci_3052: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -122 score = 5.21606 sequence = ATTCTGTATGCAAAAA Site: position = -58 score = 5.76257 sequence = ATTTTGTATGCAAAAA Gene: Bpro_2753: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -36 score = 4.93602 sequence = GTTTTGAATGCAAAAC Site: position = -102 score = 5.76257 sequence = ATTTTGAATGCAAAAA Gene: Vapar_2906: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Verminephrobacter eiseniae EF01-2	Serine--glyoxylate aminotransferase (EC 2.6.1.45)
tctC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3051: Tricarboxylate transport protein TctC, periplasmic binding subunit	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3050: Tricarboxylate transport protein TctB, small permease component	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Tricarboxylate transport protein TctB, small permease component
tctA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3049: Tricarboxylate transport membrane protein TctA, large permease component	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Tricarboxylate transport membrane protein TctA, large permease component
Daci_3770	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3770: putative exported protein	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2752: putative exported protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4273: putative exported protein	Verminephrobacter eiseniae EF01-2	putative exported protein
Daci_3771	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3771: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2751: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4272: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase	Verminephrobacter eiseniae EF01-2	Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
Daci_3772	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3772: Enoyl-CoA hydratase/isomerase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2750: Enoyl-CoA hydratase/isomerase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4271: Enoyl-CoA hydratase/isomerase	Verminephrobacter eiseniae EF01-2	Enoyl-CoA hydratase/isomerase

CRON 2.
sgaA2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -111 score = 5.05964 sequence = ATTATGCATACAAAAG Site: position = -33 score = 4.3875 sequence = AAATTGTATGCAATTT Gene: Bpro_0548: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Serine--glyoxylate aminotransferase (EC 2.6.1.45)

CRON 3.
Daci_3053	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	2 Delftia acidovorans SPH-1* Site: position = -102 score = 5.76257 sequence = TTTTTGCATTCAAAAT Site: position = -36 score = 4.63297 sequence = AAAATGAATGCAAAAT Gene: Daci_3053: Transcriptional regulator associated with tricarboxylic transport, GntR family Gene: Daci_3062: Transcriptional regulator associated with tricarboxylic transport, GntR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -86 score = 5.76257 sequence = TTTTTGCATACAAAAT Site: position = -22 score = 5.21606 sequence = TTTTTGCATACAGAAT Gene: Bpro_2754: Transcriptional regulator associated with tricarboxylic transport, GntR family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -101 score = 4.93602 sequence = GTTTTGCATTCAAAAC Site: position = -35 score = 5.76257 sequence = TTTTTGCATTCAAAAT Gene: Vapar_2905: Transcriptional regulator associated with tricarboxylic transport, GntR family	Verminephrobacter eiseniae EF01-2	Transcriptional regulator associated with tricarboxylic transport, GntR family
dld2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3054: D-lactate dehydrogenase, alternative	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2755: D-lactate dehydrogenase, alternative	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2904: D-lactate dehydrogenase, alternative	Verminephrobacter eiseniae EF01-2	D-lactate dehydrogenase, alternative

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Daci_3053 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --