Regulog Daci_3053 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization; Lactate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
- By pathway - Glycolate utilization
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 6 | 2 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | 7 | 3 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 3 | 2 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| sgaA |
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Delftia acidovorans SPH-1 Site: position = -138 score = 4.63297 sequence = ATTTTGCATTCATTTT Site: position = -72 score = 5.76257 sequence = ATTTTGAATGCAAAAA Gene: Daci_3052: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Polaromonas sp. JS666 Site: position = -122 score = 5.21606 sequence = ATTCTGTATGCAAAAA Site: position = -58 score = 5.76257 sequence = ATTTTGTATGCAAAAA Gene: Bpro_2753: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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*
Variovorax paradoxus S110 Site: position = -36 score = 4.93602 sequence = GTTTTGAATGCAAAAC Site: position = -102 score = 5.76257 sequence = ATTTTGAATGCAAAAA Gene: Vapar_2906: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
| tctC |
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Gene: Daci_3051: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
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Gene: Daci_3050: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
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Gene: Daci_3049: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
| Daci_3770 |
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Gene: Daci_3770: putative exported protein |
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Gene: Bpro_2752: putative exported protein |
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Gene: Vapar_4273: putative exported protein |
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putative exported protein |
| Daci_3771 |
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Gene: Daci_3771: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
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Gene: Bpro_2751: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
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Gene: Vapar_4272: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
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Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
| Daci_3772 |
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Gene: Daci_3772: Enoyl-CoA hydratase/isomerase |
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Gene: Bpro_2750: Enoyl-CoA hydratase/isomerase |
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Gene: Vapar_4271: Enoyl-CoA hydratase/isomerase |
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Enoyl-CoA hydratase/isomerase |
| CRON 2. | ||||||||||||
| sgaA2 |
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*
Polaromonas sp. JS666 Site: position = -111 score = 5.05964 sequence = ATTATGCATACAAAAG Site: position = -33 score = 4.3875 sequence = AAATTGTATGCAATTT Gene: Bpro_0548: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
| CRON 3. | ||||||||||||
| Daci_3053 |
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*2
Delftia acidovorans SPH-1 Site: position = -102 score = 5.76257 sequence = TTTTTGCATTCAAAAT Site: position = -36 score = 4.63297 sequence = AAAATGAATGCAAAAT Gene: Daci_3053: Transcriptional regulator associated with tricarboxylic transport, GntR family Gene: Daci_3062: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Polaromonas sp. JS666 Site: position = -86 score = 5.76257 sequence = TTTTTGCATACAAAAT Site: position = -22 score = 5.21606 sequence = TTTTTGCATACAGAAT Gene: Bpro_2754: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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*
Variovorax paradoxus S110 Site: position = -101 score = 4.93602 sequence = GTTTTGCATTCAAAAC Site: position = -35 score = 5.76257 sequence = TTTTTGCATTCAAAAT Gene: Vapar_2905: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Transcriptional regulator associated with tricarboxylic transport, GntR family |
| dld2 |
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Gene: Daci_3054: D-lactate dehydrogenase, alternative |
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Gene: Bpro_2755: D-lactate dehydrogenase, alternative |
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Gene: Vapar_2904: D-lactate dehydrogenase, alternative |
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D-lactate dehydrogenase, alternative |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |