Regulog Bll4368 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glycolate utilization; Lactate utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/Others
By pathway - Glycolate utilization
By pathway - Lactate utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110	14	5
Bradyrhizobium sp. BTAi1	4	3
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
bll6037	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110* Site: position = -7 score = 5.01526 sequence = AAAATGAATGCAAAAT Gene: bll6039: Serine--glyoxylate aminotransferase (EC 2.6.1.45) Gene: bll6037: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	2 Bradyrhizobium sp. BTAi1* Site: position = -86 score = 4.29964 sequence = TATATGAATTCGTTAT Site: position = -53 score = 4.70294 sequence = AAATTGCATGCAATCA Gene: BBta_5729: Serine--glyoxylate aminotransferase (EC 2.6.1.45) Gene: BBta_5728: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2413: Serine--glyoxylate aminotransferase (EC 2.6.1.45)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Serine--glyoxylate aminotransferase (EC 2.6.1.45)
bll6038	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll6038: major facilitator superfamily transport protein	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	major facilitator superfamily transport protein
bll6036	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll6036: Enoyl-CoA hydratase (EC 4.2.1.17)	Bradyrhizobium sp. BTAi1 Gene: BBta_5727: Enoyl-CoA hydratase (EC 4.2.1.17)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Enoyl-CoA hydratase (EC 4.2.1.17)

CRON 2.
dld2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -86 score = 5.24812 sequence = ATTTTGAATTCATAAT Gene: blr6041: D-lactate dehydrogenase, alternative	* Bradyrhizobium sp. BTAi1 Site: position = -98 score = 4.82138 sequence = AAATTGCATGCAATCT Gene: BBta_5731: D-lactate dehydrogenase, alternative	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2720: D-lactate dehydrogenase, alternative	D-lactate dehydrogenase, alternative
AZC_4683	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_4683: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr6042: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	Bradyrhizobium sp. BTAi1 Gene: BBta_5732: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	Brucella melitensis 16M Gene: BMEI0273: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	2 Mesorhizobium loti MAFF303099 Gene: msr9402: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol Gene: mlr3780: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_0298: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	Uncharacterized protein, possibly involved in utilization of glycolate and propanediol

CRON 3.
blr4369	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -104 score = 5.13436 sequence = AATTTGAATGCAAAAA Site: position = -42 score = 4.76092 sequence = ATTCTGCATTCAAAAA Gene: blr4369: Enoyl-CoA hydratase (EC 4.2.1.17)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Enoyl-CoA hydratase (EC 4.2.1.17)
blr4370	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4370: L-carnitine dehydratase/bile acid-inducible protein F	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	L-carnitine dehydratase/bile acid-inducible protein F
tctC	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4371: Tricarboxylate transport protein TctC, periplasmic binding subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b21120: Tricarboxylate transport protein TctC, periplasmic binding subunit	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20771: Tricarboxylate transport protein TctC, periplasmic binding subunit	Xanthobacter autotrophicus Py2 Gene: Xaut_0482: Tricarboxylate transport protein TctC, periplasmic binding subunit	Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4372: Tricarboxylate transport protein TctB, small permease component	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b21110: Tricarboxylate transport protein TctB, small permease component	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20770: Tricarboxylate transport protein TctB, small permease component	Xanthobacter autotrophicus Py2 Gene: Xaut_0483: Tricarboxylate transport protein TctB, small permease component	Tricarboxylate transport protein TctB, small permease component
tctA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4373: Tricarboxylate transport membrane protein TctA, large permease component	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b21100: Tricarboxylate transport membrane protein TctA, large permease component	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20769: Tricarboxylate transport membrane protein TctA, large permease component	Xanthobacter autotrophicus Py2	Tricarboxylate transport membrane protein TctA, large permease component
blr4374	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4374: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b21130: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20772: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	Xanthobacter autotrophicus Py2	4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)

CRON 4.
Bll4368	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110* Site: position = -7 score = 4.76092 sequence = TTTTTGAATGCAGAAT Site: position = 55 score = 5.13436 sequence = TTTTTGCATTCAAATT Gene: bll4368: Transcriptional regulator associated with tricarboxylic transport, GntR family Site: position = -82 score = 5.01526 sequence = ATTTTGCATTCATTTT Gene: blr6040: Transcriptional regulator associated with tricarboxylic transport, GntR family	* Bradyrhizobium sp. BTAi1 Site: position = -100 score = 4.70294 sequence = TGATTGCATGCAATTT Site: position = -67 score = 4.29964 sequence = ATAACGAATTCATATA Gene: BBta_5730: Transcriptional regulator associated with tricarboxylic transport, GntR family	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Transcriptional regulator associated with tricarboxylic transport, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Bll4368 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --