Regulog Rmet_5631 - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization; Lactate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/Others
- By pathway - Glycolate utilization
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 10 | 6 |
| Ralstonia eutropha H16 | 3 | 3 |
| Ralstonia eutropha JMP134 | 2 | 2 |
| Ralstonia metallidurans CH34 | 6 | 2 |
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| dld2 |
*
Cupriavidus taiwanensis Site: position = -12 score = 4.24922 sequence = TTCTTGCATGCCATGA Gene: RALTA_B0771: D-lactate dehydrogenase, alternative |
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Gene: Rmet_5632: D-lactate dehydrogenase, alternative |
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D-lactate dehydrogenase, alternative |
| RALTA_B0772 |
Gene: RALTA_B0772: amino acid processing enzyme (aldolase or racemase) |
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Gene: Rmet_4194: amino acid processing enzyme (aldolase or racemase) |
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amino acid processing enzyme (aldolase or racemase) |
| tctC |
Gene: RALTA_B0773: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Gene: Rmet_5629: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
Gene: RALTA_B0774: Tricarboxylate transport protein TctB, small permease component |
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Gene: Rmet_5628: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
Gene: RALTA_B0775: Tricarboxylate transport membrane protein TctA, large permease component |
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Gene: Rmet_5627: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
| sgaA |
*2
Cupriavidus taiwanensis Site: position = -190 score = 3.77275 sequence = GCTTTGCATTCAATTC Site: position = -163 score = 4.34724 sequence = AGATTGAATTCAATTT Site: position = -33 score = 5.41036 sequence = ATTTTGCATTCAAAAC Gene: RALTA_B1073: Serine--glyoxylate aminotransferase (EC 2.6.1.45) Site: position = -178 score = 5.45729 sequence = TTTTTGCATTCAATAT Site: position = -45 score = 4.90769 sequence = CGATTGCATTCAAAAT Gene: RALTA_B0770: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
*
Ralstonia eutropha H16 Site: position = -189 score = 5.44137 sequence = AATTTGCATTCAAAAT Site: position = -33 score = 5.41036 sequence = ATTTTGCATTCAAAAC Gene: H16_B1170: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
*
Ralstonia eutropha JMP134 Site: position = -188 score = 5.18686 sequence = ATCTTGCATGCAAAGT Site: position = -32 score = 5.88469 sequence = ATTTTGAATGCAAAAT Gene: Reut_B5140: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
*
Ralstonia metallidurans CH34 Site: position = -229 score = 4.49697 sequence = GTATTGTATTCAAAAC Site: position = -40 score = 5.6288 sequence = TTTTTGAATACAAAAT Gene: Rmet_5630: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
| Rmet_5631 |
*3
Cupriavidus taiwanensis Site: position = -140 score = 4.90769 sequence = ATTTTGAATGCAATCG Site: position = -7 score = 5.45729 sequence = ATATTGAATGCAAAAA Gene: RALTA_B0768: Transcriptional regulator associated with tricarboxylic transport, GntR family Site: position = -7 score = 3.77275 sequence = GAATTGAATGCAAAGC Site: position = -164 score = 5.41036 sequence = GTTTTGAATGCAAAAT Site: position = -34 score = 4.34724 sequence = AAATTGAATTCAATCT Gene: RALTA_B1072: Transcriptional regulator associated with tricarboxylic transport, GntR family Site: position = -7 score = 4.27668 sequence = ACATTGCATGCAACCT Gene: RALTA_B1543: Transcriptional regulator associated with tricarboxylic transport, GntR family |
*2
Ralstonia eutropha H16 Site: position = -7 score = 4.94871 sequence = ACATTGCATGCAAACT Gene: H16_B1853: Transcriptional regulator associated with tricarboxylic transport, GntR family Site: position = -7 score = 5.44137 sequence = ATTTTGAATGCAAATT Site: position = -163 score = 5.41036 sequence = GTTTTGAATGCAAAAT Gene: H16_B1169: Transcriptional regulator associated with tricarboxylic transport, GntR family |
*
Ralstonia eutropha JMP134 Site: position = -163 score = 5.88469 sequence = ATTTTGCATTCAAAAT Site: position = -7 score = 5.18686 sequence = ACTTTGCATGCAAGAT Gene: Reut_B5139: Transcriptional regulator associated with tricarboxylic transport, GntR family |
*
Ralstonia metallidurans CH34 Site: position = -226 score = 5.6288 sequence = ATTTTGTATTCAAAAA Site: position = -37 score = 4.49697 sequence = GTTTTGAATACAATAC Gene: Rmet_5631: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Transcriptional regulator associated with tricarboxylic transport, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |