Regulog Bpet4349 - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization; Lactate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By pathway - Glycolate utilization
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | ||
| Bordetella bronchiseptica RB50 | 4 | 3 |
| Bordetella petrii DSM 12804 | 8 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| Bpet4349 |
|
*
Bordetella bronchiseptica RB50 Site: position = -179 score = 4.05945 sequence = TATTGGTATACCAACT Gene: BB4672: Transcriptional regulator associated with tricarboxylic transport, GntR family |
*
Bordetella petrii DSM 12804 Site: position = -13 score = 4.51375 sequence = TGTTTGTATACAAATG Site: position = -190 score = 5.3628 sequence = ATTTGGTATACAAAAT Gene: Bpet4349: Transcriptional regulator associated with tricarboxylic transport, GntR family |
Transcriptional regulator associated with tricarboxylic transport, GntR family |
| dld2 |
|
|
Gene: Bpet4348: D-lactate dehydrogenase, alternative |
D-lactate dehydrogenase, alternative |
| CRON 2. | ||||
| sgaA |
|
*
Bordetella bronchiseptica RB50 Site: position = -35 score = 4.05945 sequence = AGTTGGTATACCAATA Gene: BB4671: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
*
Bordetella petrii DSM 12804 Site: position = -209 score = 4.51375 sequence = CATTTGTATACAAACA Site: position = -32 score = 5.3628 sequence = ATTTTGTATACCAAAT Gene: Bpet4350: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
| tctC |
|
|
Gene: Bpet4351: Tricarboxylate transport protein TctC, periplasmic binding subunit |
Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
|
|
Gene: Bpet4352: Tricarboxylate transport protein TctB, small permease component |
Tricarboxylate transport protein TctB, small permease component |
| tctA |
|
|
Gene: Bpet4353: Tricarboxylate transport membrane protein TctA, large permease component |
Tricarboxylate transport membrane protein TctA, large permease component |
| Bpet4354 |
|
*
Bordetella bronchiseptica RB50 Site: position = -103 score = 3.97688 sequence = ATCTTGCATGTATGAT Site: position = -91 score = 4.13049 sequence = TGATTGCATTCAATCG Gene: BB1501: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Bpet4354: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| BB1502 |
|
Gene: BB1502: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
Gene: Bpet4355: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |