Regulog YdcR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Alcanivorax borkumensis SK2
Hahella chejuensis KCTC 2396	1	1
Chromohalobacter salexigens DSM 3043
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Marinobacter aqueolei
Marinobacter sp. ELB17
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
COG0348	Alcanivorax borkumensis SK2	* Hahella chejuensis KCTC 2396 Site: position = -102 score = 9.15909 sequence = ATCTGATATGGTTTT-(9)-TTCTGAAACTGTTTG Gene: HCH_03522: Polyferredoxin	Chromohalobacter salexigens DSM 3043	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	* Cellvibrio japonicus Ueda107 Site: position = -104 score = 9.84923 sequence = ATCTGATACGGTTTT-(9)-AACTGAATCTGTTTT Gene: CJA_3712: Polyferredoxin	Polyferredoxin
ydcR	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396 Gene: HCH_03523: Transcriptional regulator, GntR family	Chromohalobacter salexigens DSM 3043	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107 Gene: CJA_3711: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --