Regulog YdcR - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis	7	3
Ralstonia eutropha H16	6	2
Ralstonia eutropha JMP134	5	2
Ralstonia metallidurans CH34
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
COG2124	* Cupriavidus taiwanensis Site: position = -211 score = 7.56911 sequence = ATCTGTCGCGGTAAG-(10)-ATCTGATGCCGGTTA Gene: pRALTA_0449: Cytochrome P450	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Cytochrome P450

CRON 2.
PF01654	* Cupriavidus taiwanensis Site: position = -308 score = 9.11492 sequence = ATCTGATACGGTGTT-(9)-ATTTGATTCTGTTCC Gene: RALTA_B1080: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	* Ralstonia eutropha H16 Site: position = -307 score = 8.62014 sequence = AACTGATACGGTATT-(9)-AGGTGATGCTGTTCG Gene: H16_B1177: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	* Ralstonia eutropha JMP134 Site: position = -290 score = 8.49051 sequence = CTCTGATACGGTCTT-(9)-TTTTGCTTCTGTTCT Gene: Reut_B4284: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_4955: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
PF02322	Cupriavidus taiwanensis Gene: RALTA_B1079: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Ralstonia eutropha H16 Gene: H16_B1176: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Ralstonia eutropha JMP134 Gene: Reut_B4285: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_4956: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
h16_B1175	Cupriavidus taiwanensis Gene: RALTA_B1078: conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence	Ralstonia eutropha H16 Gene: H16_B1175: conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence

CRON 3.
h16_A1590	* Cupriavidus taiwanensis Site: position = -107 score = 8.64083 sequence = AACTGATACGTAATT-(9)-ATCTGATGCTGGTAT Gene: RALTA_A1517: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS)	* Ralstonia eutropha H16 Site: position = -100 score = 8.89424 sequence = AACTGATACGTAAAA-(9)-ATCTGATGCTGTTAT Gene: H16_A1590: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS)	* Ralstonia eutropha JMP134 Site: position = -119 score = 8.41216 sequence = ATCTGATATGCAAGA-(9)-ATCTGCTGCTGTCAT Gene: Reut_A1452: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS)	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS)
COG3258	Cupriavidus taiwanensis Gene: RALTA_A1518: Putative diheme cytochrome c-553	Ralstonia eutropha H16 Gene: H16_A1591: Putative diheme cytochrome c-553	Ralstonia eutropha JMP134 Gene: Reut_A1453: Putative diheme cytochrome c-553	Ralstonia metallidurans CH34 Gene: Rmet_1599: Putative diheme cytochrome c-553	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Putative diheme cytochrome c-553
h16_A1592	Cupriavidus taiwanensis Gene: RALTA_A1519: putative three-component membrane-bound alcohol deshydrogenase	Ralstonia eutropha H16 Gene: H16_A1592: putative three-component membrane-bound alcohol deshydrogenase	Ralstonia eutropha JMP134 Gene: Reut_A1454: putative three-component membrane-bound alcohol deshydrogenase	Ralstonia metallidurans CH34 Gene: Rmet_1600: putative three-component membrane-bound alcohol deshydrogenase	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	putative three-component membrane-bound alcohol deshydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --