Regulog YdcR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 7 | 3 |
| Ralstonia eutropha H16 | 6 | 2 |
| Ralstonia eutropha JMP134 | 5 | 2 |
| Ralstonia metallidurans CH34 | ||
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| COG2124 |
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Cupriavidus taiwanensis Site: position = -211 score = 7.56911 sequence = ATCTGTCGCGGTAAG-(10)-ATCTGATGCCGGTTA Gene: pRALTA_0449: Cytochrome P450 |
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Cytochrome P450 |
| CRON 2. | |||||||
| PF01654 |
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Cupriavidus taiwanensis Site: position = -308 score = 9.11492 sequence = ATCTGATACGGTGTT-(9)-ATTTGATTCTGTTCC Gene: RALTA_B1080: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Ralstonia eutropha H16 Site: position = -307 score = 8.62014 sequence = AACTGATACGGTATT-(9)-AGGTGATGCTGTTCG Gene: H16_B1177: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Ralstonia eutropha JMP134 Site: position = -290 score = 8.49051 sequence = CTCTGATACGGTCTT-(9)-TTTTGCTTCTGTTCT Gene: Reut_B4284: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: Rmet_4955: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
| PF02322 |
Gene: RALTA_B1079: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: H16_B1176: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: Reut_B4285: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: Rmet_4956: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
| h16_B1175 |
Gene: RALTA_B1078: conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence |
Gene: H16_B1175: conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence |
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conserved hypothetical protein; Cytochrome bd ubiquinol oxidase associated sequence |
| CRON 3. | |||||||
| h16_A1590 |
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Cupriavidus taiwanensis Site: position = -107 score = 8.64083 sequence = AACTGATACGTAATT-(9)-ATCTGATGCTGGTAT Gene: RALTA_A1517: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS) |
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Ralstonia eutropha H16 Site: position = -100 score = 8.89424 sequence = AACTGATACGTAAAA-(9)-ATCTGATGCTGTTAT Gene: H16_A1590: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS) |
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Ralstonia eutropha JMP134 Site: position = -119 score = 8.41216 sequence = ATCTGATATGCAAGA-(9)-ATCTGCTGCTGTCAT Gene: Reut_A1452: putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS) |
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putative three-component membrane-bound alcohol deshydrogenase, subunit III (AdhS) |
| COG3258 |
Gene: RALTA_A1518: Putative diheme cytochrome c-553 |
Gene: H16_A1591: Putative diheme cytochrome c-553 |
Gene: Reut_A1453: Putative diheme cytochrome c-553 |
Gene: Rmet_1599: Putative diheme cytochrome c-553 |
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Putative diheme cytochrome c-553 |
| h16_A1592 |
Gene: RALTA_A1519: putative three-component membrane-bound alcohol deshydrogenase |
Gene: H16_A1592: putative three-component membrane-bound alcohol deshydrogenase |
Gene: Reut_A1454: putative three-component membrane-bound alcohol deshydrogenase |
Gene: Rmet_1600: putative three-component membrane-bound alcohol deshydrogenase |
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putative three-component membrane-bound alcohol deshydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |