Regulog YdcR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Shewanella amazonensis SB2B
Shewanella baltica OS155	2	1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella pealeana ATCC 700345
Shewanella piezotolerans WP3
Shewanella putrefaciens CN-32	2	1
Shewanella sediminis HAW-EB3
Shewanella sp ANA-3	2	1
Shewanella sp MR-4
Shewanella sp MR-7	2	1
Shewanella sp W3-18-1	2	1
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
PF01654	Shewanella amazonensis SB2B	* Shewanella baltica OS155 Site: position = -159 score = 8.826 sequence = ATCTGTTATAGCTCA-(9)-TTCTGTGTCTGTTAT Gene: Sbal_0914: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella halifaxensis HAW-EB4	Shewanella loihica PV-4	Shewanella oneidensis MR-1	Shewanella pealeana ATCC 700345	Shewanella piezotolerans WP3	* Shewanella putrefaciens CN-32 Site: position = -160 score = 8.55531 sequence = ATCTGTTATAGCCCA-(9)-TTCTGTGTCTGTTAT Gene: Sputcn32_0930: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Shewanella sediminis HAW-EB3	* Shewanella sp ANA-3 Site: position = -147 score = 9.11043 sequence = ATCTGTTATAGCTAA-(9)-TTCTGTATCTGTTAT Gene: Shewana3_0928: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Shewanella sp MR-4	* Shewanella sp MR-7 Site: position = -147 score = 9.11043 sequence = ATCTGTTATAGCTAA-(9)-TTCTGTATCTGTTAT Gene: Shewmr7_0964: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	* Shewanella sp W3-18-1 Site: position = -158 score = 8.55531 sequence = ATCTGTTATAGCCCA-(9)-TTCTGTGTCTGTTAT Gene: Sputw3181_3246: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Shewanella woodyi ATCC 51908	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
PF02322	Shewanella amazonensis SB2B	Shewanella baltica OS155 Gene: Sbal_0913: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella halifaxensis HAW-EB4	Shewanella loihica PV-4	Shewanella oneidensis MR-1	Shewanella pealeana ATCC 700345	Shewanella piezotolerans WP3	Shewanella putrefaciens CN-32 Gene: Sputcn32_0929: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Shewanella sediminis HAW-EB3	Shewanella sp ANA-3 Gene: Shewana3_0927: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Shewanella sp MR-4	Shewanella sp MR-7 Gene: Shewmr7_0963: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Shewanella sp W3-18-1 Gene: Sputw3181_3247: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Shewanella woodyi ATCC 51908	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --