Regulog YdcR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Shewanella amazonensis SB2B | ||
| Shewanella baltica OS155 | 2 | 1 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella loihica PV-4 | ||
| Shewanella oneidensis MR-1 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella putrefaciens CN-32 | 2 | 1 |
| Shewanella sediminis HAW-EB3 | ||
| Shewanella sp ANA-3 | 2 | 1 |
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | 2 | 1 |
| Shewanella sp W3-18-1 | 2 | 1 |
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| PF01654 |
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Shewanella baltica OS155 Site: position = -159 score = 8.826 sequence = ATCTGTTATAGCTCA-(9)-TTCTGTGTCTGTTAT Gene: Sbal_0914: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Shewanella putrefaciens CN-32 Site: position = -160 score = 8.55531 sequence = ATCTGTTATAGCCCA-(9)-TTCTGTGTCTGTTAT Gene: Sputcn32_0930: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Shewanella sp ANA-3 Site: position = -147 score = 9.11043 sequence = ATCTGTTATAGCTAA-(9)-TTCTGTATCTGTTAT Gene: Shewana3_0928: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Shewanella sp MR-7 Site: position = -147 score = 9.11043 sequence = ATCTGTTATAGCTAA-(9)-TTCTGTATCTGTTAT Gene: Shewmr7_0964: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Shewanella sp W3-18-1 Site: position = -158 score = 8.55531 sequence = ATCTGTTATAGCCCA-(9)-TTCTGTGTCTGTTAT Gene: Sputw3181_3246: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
| PF02322 |
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Gene: Sbal_0913: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Gene: Sputcn32_0929: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Gene: Shewana3_0927: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Gene: Shewmr7_0963: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: Sputw3181_3247: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |