Regulog YdcR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Thiobacillus denitrificans	2	1
Nitrosospira multiformis ATCC 25196
Nitrosomonas europaea ATCC 19718
Methylotenera mobilis JLW8	3	1
Methylophilales bacterium HTCC2181
Methylobacillus flagellatus KT	2	2
Laribacter hongkongensis HLHK9	1	1
Neisseria meningitidis MC58
Chromobacterium violaceum ATCC 12472	2	1
Azoarcus sp. EbN1
Dechloromonas aromatica RCB	5	3
Thauera sp. MZ1T	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
cysI	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	* Methylotenera mobilis JLW8 Site: position = -123 score = 8.76847 sequence = ATCTGTTATGCTTTT-(9)-ATCTGTCTCTGTTAT Gene: Mmol_1441: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Chromobacterium violaceum ATCC 12472	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
Mmol_1440	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8 Gene: Mmol_1440: hypothetical protein	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Chromobacterium violaceum ATCC 12472	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	hypothetical protein
COG0348	Thiobacillus denitrificans Gene: Tbd_0639: Polyferredoxin	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8 Gene: Mmol_1439: Polyferredoxin	Methylophilales bacterium HTCC2181	2 Methylobacillus flagellatus KT* Site: position = -93 score = 9.63675 sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT Gene: Mfla_0901: Polyferredoxin Site: position = -93 score = 9.63675 sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT Gene: Mfla_1045: Polyferredoxin	* Laribacter hongkongensis HLHK9 Site: position = -120 score = 7.89968 sequence = ATCTGTTCCTATGAA-(10)-TCCTGAATCTGTCTG Gene: LHK_02096: Polyferredoxin	Neisseria meningitidis MC58	* Chromobacterium violaceum ATCC 12472 Site: position = -33 score = 6.30785 sequence = ATCTGTACTGATATT-(9)-GTCTGTTCATTGTTT Gene: CV1452: Polyferredoxin	Azoarcus sp. EbN1	* Dechloromonas aromatica RCB Site: position = -96 score = 9.43983 sequence = ATCTGTTCCTATAAG-(10)-ATCTGAAACTGTTTC Gene: Daro_1066: Polyferredoxin	* Thauera sp. MZ1T Site: position = -94 score = 8.69971 sequence = ATCTGTACCTGTTCC-(10)-ATCTGCAACTGAAGC Gene: Tmz1t_2223: Polyferredoxin	Polyferredoxin
ydcR	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Chromobacterium violaceum ATCC 12472 Gene: CV1451: Transcriptional regulator, GntR family domain	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Transcriptional regulator, GntR family domain

CRON 2.
COG1845	* Thiobacillus denitrificans Site: position = -88 score = 6.32783 sequence = GTCTGTGCCGGTCGG-(10)-TTCTGTGTCTGCACC Gene: Tbd_1970: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Chromobacterium violaceum ATCC 12472	Azoarcus sp. EbN1	2 Dechloromonas aromatica RCB* Site: position = -94 score = 7.69771 sequence = ATCTGTGCCTATCGA-(10)-TTCTGTTTCTGTGCA Site: position = -69 score = 7.26781 sequence = TTCTGTTTCTGTGCA-(10)-AACTGAAACAATACG Gene: Daro_1065: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) Site: position = -103 score = 6.19182 sequence = ATCTTTTTGTTTCGT-(9)-ACCTGATCCGTTGAT Gene: Daro_0445: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	* Thauera sp. MZ1T Site: position = -90 score = 6.35755 sequence = GTCTGTGCCGGACGA-(10)-GACTGTTCCTGTCCG Gene: Tmz1t_2224: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Tbd_1971	Thiobacillus denitrificans Gene: Tbd_1971: hypothetical protein	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Chromobacterium violaceum ATCC 12472	Azoarcus sp. EbN1	2 Dechloromonas aromatica RCB Gene: Daro_0444: hypothetical protein Gene: Daro_1064: hypothetical protein	Thauera sp. MZ1T Gene: Tmz1t_2225: hypothetical protein	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --