Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdcR - Various betaproteobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thiobacillus denitrificans 2 1
Nitrosospira multiformis ATCC 25196
Nitrosomonas europaea ATCC 19718
Methylotenera mobilis JLW8 3 1
Methylophilales bacterium HTCC2181
Methylobacillus flagellatus KT 2 2
Laribacter hongkongensis HLHK9 1 1
Neisseria meningitidis MC58
Chromobacterium violaceum ATCC 12472 2 1
Azoarcus sp. EbN1
Dechloromonas aromatica RCB 5 3
Thauera sp. MZ1T 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cysI
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
*
Methylotenera mobilis JLW8

Site:
position = -123
score = 8.76847
sequence = ATCTGTTATGCTTTT-(9)-ATCTGTCTCTGTTAT

Gene: Mmol_1441: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Chromobacterium violaceum ATCC 12472
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
Mmol_1440
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8

Gene: Mmol_1440: hypothetical protein
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Chromobacterium violaceum ATCC 12472
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T
hypothetical protein
COG0348
 
Thiobacillus denitrificans

Gene: Tbd_0639: Polyferredoxin
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8

Gene: Mmol_1439: Polyferredoxin
 
Methylophilales bacterium HTCC2181
*2
Methylobacillus flagellatus KT

Site:
position = -93
score = 9.63675
sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT

Gene: Mfla_0901: Polyferredoxin

Site:
position = -93
score = 9.63675
sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT

Gene: Mfla_1045: Polyferredoxin
*
Laribacter hongkongensis HLHK9

Site:
position = -120
score = 7.89968
sequence = ATCTGTTCCTATGAA-(10)-TCCTGAATCTGTCTG

Gene: LHK_02096: Polyferredoxin
 
Neisseria meningitidis MC58
*
Chromobacterium violaceum ATCC 12472

Site:
position = -33
score = 6.30785
sequence = ATCTGTACTGATATT-(9)-GTCTGTTCATTGTTT

Gene: CV1452: Polyferredoxin
 
Azoarcus sp. EbN1
*
Dechloromonas aromatica RCB

Site:
position = -96
score = 9.43983
sequence = ATCTGTTCCTATAAG-(10)-ATCTGAAACTGTTTC

Gene: Daro_1066: Polyferredoxin
*
Thauera sp. MZ1T

Site:
position = -94
score = 8.69971
sequence = ATCTGTACCTGTTCC-(10)-ATCTGCAACTGAAGC

Gene: Tmz1t_2223: Polyferredoxin
Polyferredoxin
ydcR
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Chromobacterium violaceum ATCC 12472

Gene: CV1451: Transcriptional regulator, GntR family domain
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T
Transcriptional regulator, GntR family domain
 
CRON 2.
COG1845
*
Thiobacillus denitrificans

Site:
position = -88
score = 6.32783
sequence = GTCTGTGCCGGTCGG-(10)-TTCTGTGTCTGCACC

Gene: Tbd_1970: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Chromobacterium violaceum ATCC 12472
 
Azoarcus sp. EbN1
*2
Dechloromonas aromatica RCB

Site:
position = -94
score = 7.69771
sequence = ATCTGTGCCTATCGA-(10)-TTCTGTTTCTGTGCA

Site:
position = -69
score = 7.26781
sequence = TTCTGTTTCTGTGCA-(10)-AACTGAAACAATACG

Gene: Daro_1065: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)

Site:
position = -103
score = 6.19182
sequence = ATCTTTTTGTTTCGT-(9)-ACCTGATCCGTTGAT

Gene: Daro_0445: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
*
Thauera sp. MZ1T

Site:
position = -90
score = 6.35755
sequence = GTCTGTGCCGGACGA-(10)-GACTGTTCCTGTCCG

Gene: Tmz1t_2224: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Tbd_1971
 
Thiobacillus denitrificans

Gene: Tbd_1971: hypothetical protein
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Chromobacterium violaceum ATCC 12472
 
Azoarcus sp. EbN1
 2
Dechloromonas aromatica RCB

Gene: Daro_0444: hypothetical protein

Gene: Daro_1064: hypothetical protein
 
Thauera sp. MZ1T

Gene: Tmz1t_2225: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD