Regulog YdcR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Thiobacillus denitrificans | 2 | 1 |
| Nitrosospira multiformis ATCC 25196 | ||
| Nitrosomonas europaea ATCC 19718 | ||
| Methylotenera mobilis JLW8 | 3 | 1 |
| Methylophilales bacterium HTCC2181 | ||
| Methylobacillus flagellatus KT | 2 | 2 |
| Laribacter hongkongensis HLHK9 | 1 | 1 |
| Neisseria meningitidis MC58 | ||
| Chromobacterium violaceum ATCC 12472 | 2 | 1 |
| Azoarcus sp. EbN1 | ||
| Dechloromonas aromatica RCB | 5 | 3 |
| Thauera sp. MZ1T | 3 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| cysI |
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Methylotenera mobilis JLW8 Site: position = -123 score = 8.76847 sequence = ATCTGTTATGCTTTT-(9)-ATCTGTCTCTGTTAT Gene: Mmol_1441: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
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Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
| Mmol_1440 |
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Gene: Mmol_1440: hypothetical protein |
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hypothetical protein |
| COG0348 |
Gene: Tbd_0639: Polyferredoxin |
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Gene: Mmol_1439: Polyferredoxin |
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*2
Methylobacillus flagellatus KT Site: position = -93 score = 9.63675 sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT Gene: Mfla_0901: Polyferredoxin Site: position = -93 score = 9.63675 sequence = ATCTGACACTATAAA-(9)-ATCTGAATCTGTTAT Gene: Mfla_1045: Polyferredoxin |
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Laribacter hongkongensis HLHK9 Site: position = -120 score = 7.89968 sequence = ATCTGTTCCTATGAA-(10)-TCCTGAATCTGTCTG Gene: LHK_02096: Polyferredoxin |
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Chromobacterium violaceum ATCC 12472 Site: position = -33 score = 6.30785 sequence = ATCTGTACTGATATT-(9)-GTCTGTTCATTGTTT Gene: CV1452: Polyferredoxin |
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Dechloromonas aromatica RCB Site: position = -96 score = 9.43983 sequence = ATCTGTTCCTATAAG-(10)-ATCTGAAACTGTTTC Gene: Daro_1066: Polyferredoxin |
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Thauera sp. MZ1T Site: position = -94 score = 8.69971 sequence = ATCTGTACCTGTTCC-(10)-ATCTGCAACTGAAGC Gene: Tmz1t_2223: Polyferredoxin |
Polyferredoxin |
| ydcR |
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Gene: CV1451: Transcriptional regulator, GntR family domain |
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Transcriptional regulator, GntR family domain |
| CRON 2. | |||||||||||||
| COG1845 |
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Thiobacillus denitrificans Site: position = -88 score = 6.32783 sequence = GTCTGTGCCGGTCGG-(10)-TTCTGTGTCTGCACC Gene: Tbd_1970: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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*2
Dechloromonas aromatica RCB Site: position = -94 score = 7.69771 sequence = ATCTGTGCCTATCGA-(10)-TTCTGTTTCTGTGCA Site: position = -69 score = 7.26781 sequence = TTCTGTTTCTGTGCA-(10)-AACTGAAACAATACG Gene: Daro_1065: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) Site: position = -103 score = 6.19182 sequence = ATCTTTTTGTTTCGT-(9)-ACCTGATCCGTTGAT Gene: Daro_0445: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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Thauera sp. MZ1T Site: position = -90 score = 6.35755 sequence = GTCTGTGCCGGACGA-(10)-GACTGTTCCTGTCCG Gene: Tmz1t_2224: Cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
Cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
| Tbd_1971 |
Gene: Tbd_1971: hypothetical protein |
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2
Dechloromonas aromatica RCB Gene: Daro_0444: hypothetical protein Gene: Daro_1064: hypothetical protein |
Gene: Tmz1t_2225: hypothetical protein |
hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |